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EMAGE:21301

Tube1 epsilon-tubulin 1 ( MGI:1919174)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:21301 EMAGE:21301 EMAGE:21301 EMAGE:21301 EMAGE:21301
"Pseudo-wholemount" of euxassay_012292. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_012292_01 euxassay_012292_02 euxassay_012292_03 euxassay_012292_04
EMAGE:21301 EMAGE:21301 EMAGE:21301 EMAGE:21301 EMAGE:21301
euxassay_012292_05 euxassay_012292_06 euxassay_012292_07 euxassay_012292_08 euxassay_012292_09
EMAGE:21301 EMAGE:21301 EMAGE:21301 EMAGE:21301 EMAGE:21301
euxassay_012292_10 euxassay_012292_11 euxassay_012292_12 euxassay_012292_13 euxassay_012292_14
EMAGE:21301 EMAGE:21301 EMAGE:21301 EMAGE:21301 EMAGE:21301
euxassay_012292_15 euxassay_012292_16 euxassay_012292_17 euxassay_012292_18 euxassay_012292_19
EMAGE:21301 EMAGE:21301
euxassay_012292_20 euxassay_012292_21

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:21301Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
21301_wholemount_strong.wlz
21301_wholemount_moderate.wlz
21301_wholemount_weak.wlz
21301_wholemount_possible.wlz
21301_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:21301_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
telencephalon ventricular layer
weak weak
regionalweak expression: see section 5 6 5 6
palatal shelf
moderate moderate
regionalmoderate expression: see section 7 8 2 5 6
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T30418
Entity Detected:Tube1, epsilon-tubulin 1 ( MGI:1919174)
Sequence:sense strand is shown

>T30418
AGGAACAGGCTCTGGGCTTGGCACATTTCTGTTAAAGGTTCTTGAAGATGAATTCCCAGAAGTGTACCGG
TTTGTGACAGCGGTTTATCCTTCCAGTGAAGACGATGTCATCACCTCGCCTTATAACAGTATGCTGGCCA
TGAAGGAACTGAATGAGCATGCAGACTGTGTGCTGCCCATTGACAACCAATCTTTATTTGACATCATTAG
CAAAATTGATCTTGTGGTAAATTCTGGAAAGTTGGGCTCAGCTGTGAAGCCTAAGAGTCTCATTACGTCG
AACATGGGGGCTGTTAAAAAGCACCACAAGAAGCCCTTCGACGCCATGAACAACATTGTGGCGAACCTGC
TCCTCAGCCTGACAAGCTCTGCGAGGTTTGAGGGCTCCCTCAATATGGACCTGAATGAGATCAGCATGAA
CTTGGTTCCTTTCCCGAAGCTTCATTATCTCGTGTCAAGCCTGACACCTCTGTACACGCTGGCCGATGTT
AACATTCCCCCCCGAAGACTGGATCAGATGTTTTCAGACGCCTTTAGTAAGGATCACCAGCTCATCCAAG
CAGACCCCAGACATAGCCTCTACCTTGCCTGTGCCCTCATCGTTAGAGGAAACGTACAGATTTCCGATCT
TCGCAGAAATATTGAAAGATTAAAACCTGCTCTGCAGTTTGTCTCCTGGAATCAAGAAGGCTGGAAGACC
AGCCTGTGTTCTGTACCGCCTGTGGGCCACTCGCATTCTCTGTTAGCTTTAGCAAATAACACGTGTGTGA
AGCCTACCTTCATGGAGCTGAGAGAAAGGTTCACAAGGCTCTACAAGAAAAAGGCTCACCTCCATCACTA
CCTGCAAGTTGATGGGATGGAGGAAAGCACTTTTACGGAAGCTGTGTCCTCTCTGTCAGCGCTCATACAG
GAGTACAGTGACCTCGATGCCACAAAGAGCCTGCCTGTGCCAGATGT
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:6333817), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 60470. Forward Primer - name:060470_F_IRAV104_d09_Tube1, sequence:AGGAACAGGCTCTGGGCT; Reverse Primer - name:060470_R_SP6_IRAV104_d09_Tube1, sequence:CACATCTGGCACAGGCAG. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_012292 same experiment
 EMAGE:21297 same embryo
 EMAGE:21298 same embryo
 EMAGE:21299 same embryo
 EMAGE:21300 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS