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EMAGE:21578

Hpdl 4-hydroxyphenylpyruvate dioxygenase-like ( MGI:2444646)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:21578
euxassay_003188_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:21578Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
21578_wholemount_possible.wlz
21578_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:21578_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4196
Entity Detected:Hpdl, 4-hydroxyphenylpyruvate dioxygenase-like ( MGI:2444646)
Sequence:sense strand is shown

>T4196
GTTCTAAACAAGTGAGCGGTCCCAGAAGAACAGATCCGGGTGGCCGGCAATTGGGCTCGCCATGACTGCG
CCCGCCCGTCGCCTGTGTCACATCGCTTTCCATGTACCAGCTGGGCAGCCCCTAGCGAGGGACCTACATC
GTGTCTTCGGCTTCCAGCCCCTGGCGGTGAGGGAAGCAGGCGGCTGGAGACAGCTGGCCCTGCGCAGCGG
GGACGCTGTCTTTCTAGTGAATGAGGGTACCGGGCCCCAGGAGCCACTGTACAGCCTGGACCCGCATCAT
TCGGTGCCCAGTGCCACGAACCTGTGCTTCGACGTGGAGGATGTGGACGGCGCCGCCCGCGCGCTGGCGG
CTCGCGGCTGCATCATGCCGGTACCACCCACTAGGGTGAGAGATGCACAGGGCACAGCCACTTACACAGT
GCTCAGCTCTCCGGCTGGTAATCTAAGTCTTACGTTGCTGCAGCGTGCTGGCTATCGCGGATCCTTCCTG
CCCGGGTTCAGACCTCTGCCTTGCACACCTGGCCCAGGTTGGGTCAGCCACGTGGACCACTTGACCTTGG
CCTGCACCTCCGGCAGCTCCCCTATGCTTATGCGCTGGTTCCACGACTGCCTAGGCTTTCATCACTTGCC
GCTGAGCCCAGGTGAGGATCCGGAGATGGGCCTCAAGGTGGCTGCAGGGTCTGGGCGAGGGGGACTACGG
CTTACTGCCTTGCAGACTCCGCCGAATAATACTGTCCCCACCCTCGTGCTGGCGGAGTCCCTACCGGGAC
TCAACAGCAAACAGGACCAGGTAGAGCAATTTCTAACCCGGCATGGGGGGCCAGGCCTGCAGCACGTAGG
ACTGTACACTCCTAACATCATAGATGCTTCTGAGGGAATGGCGAAGGCGGGATGCCGGCTTCTGACTCCT
CCTGAAGCTTATTACCAGCAGCCCGGCAAAGAAGAACAAATTCTAGCCGCAGGGCACAAGCCTGGCCTTC
TAGAACGGCAGGGAATCCTGCTGGATGGTGATAAAGACGAATTTTTGCTTCAGGTCTTCACCAAGTCCCT
CTTCGCCGAAGACACTTTCTTCCTGGAGCTGATTCAGAGACAGGGGGCCACAGGCTTTGGCCAGAACAAC
ATCAGGGCACTATGGCAGTCGGTGCAAGAGGAAGCAGCCAGGGCCCAGGGAGCCTAACCCAGGCTAGGCC
TGGGAGTTGCCACTTGTCCTTGGTGCTCCTTGCCTGTTGGAACTGACACACGCCAGCAGGAGCTGGACCA
CACCTCCACAGAACTACACCCAGATAGAAAGGCTCTAGTTCCCTCAGGGTCAGGTGTGATCTTCATCCCA
AACAGTATCTGAGATGGGATTTAGAACAGCAAGAACCCCTAAAATGTCTAGGTAATATCAATAAAGGAAT
CCGGTCGTAAGGCAACCACAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4489103 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4489103 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_003188 same experiment
 EMAGE:21580 same embryo
 EMAGE:21575 same embryo
 EMAGE:21579 same embryo
 EMAGE:21577 same embryo
 EMAGE:21576 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS