EMAGE mouse gene expression spatial database

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EMAGE:21670

Cadm3 cell adhesion molecule 3 ( MGI:2137858)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_014341. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_014341_01	euxassay_014341_02	euxassay_014341_03	euxassay_014341_04

euxassay_014341_05	euxassay_014341_06	euxassay_014341_07	euxassay_014341_08	euxassay_014341_09

euxassay_014341_10	euxassay_014341_11	euxassay_014341_12	euxassay_014341_13	euxassay_014341_14

euxassay_014341_15	euxassay_014341_16	euxassay_014341_17	euxassay_014341_18	euxassay_014341_19

euxassay_014341_20	euxassay_014341_21	euxassay_014341_22	euxassay_014341_23	euxassay_014341_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

21670_wholemount_strong.wlz

21670_wholemount_moderate.wlz

21670_wholemount_weak.wlz

21670_wholemount_possible.wlz

21670_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:21670_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

brain

strong

regional

strong expression: see section 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4

facial vii ganglion

strong

regional

strong expression: see section 4 5 6 7 7 8 9 0

glossopharyngeal ix ganglion

strong

regional

strong expression: see section 6

trigeminal v ganglion

strong

regional

strong expression: see section 3 4 5 6 7 8 9 6 7 8 9 0 1

vagus x ganglion

strong

regional

strong expression: see section 7

vestibulocochlear viii ganglion

strong

regional

strong expression: see section 6

trigeminal v nerve

strong

regional

strong expression: see section 9 0 6

spinal cord

strong

regional

strong expression: see section 6 7 8 9 0 1 2 3 4

dorsal root ganglion

strong

regional

strong expression: see section 5 6 7 8 3 4 5

neural retina

strong

regional

strong expression: see section 2 3 4 5 3 4

nasal cavity olfactory epithelium

strong

regional

strong expression: see section 3 5 6 7 8

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T31512
Entity Detected:	Cadm3, cell adhesion molecule 3 ( MGI:2137858)
Sequence:	sense strand is shown >T31512 AGAACCCAGGGCTTCACCGTGTTCCTCCCAGTGAGAGTAGATTTCCAGAGAGGGTGGTGGAATCAGCCCT GTTCACCCATTGCTCCCACACAGTGAATGAAGCTAGGCTCTTTTAACAGAATCTGCCCTTGGGGGACAGT AGGGCTCAGTCTTCTCTCCCAGCTCCAGCAGCTGTGGAAGAGGCAGCTGTGGACCTGAACAACGTCTGCT GCCCCCACCTCGGAGGGGCCCCTCACTCTTACCCGAGCCCCTGGACTGTTGCACGGCAACCGCTCCTCTT ATGGCATTGCTCAGCAACTACTCCTCCACCCTGTGTCACCCCGTGCCCTCTCCGGTTCCCTGTGCCAGCC CTCGGTCCCTCCTCCCTCAGCAGCCAGGCAGACATGACAACAAAATTACTAAAAGGAGCTTCGCTGCAGT GAGCTGTTTCCTGCCCA
Notes:	The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:5364869), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 62889. Forward Primer - name:062889_F_IRAV63-66_N15_Igsf4b, sequence:AGAACCCAGGGCTTCACC; Reverse Primer - name:062889_R_SP6_IRAV63-66_N15_Igsf4b, sequence:TTGGGCAGGAAACAGCTC. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EurExpress:euxassay_014341 same experiment
	EMAGE:21674 same embryo
	EMAGE:21673 same embryo
	EMAGE:21671 same embryo
	EMAGE:21672 same embryo
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source