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EMAGE:31255

Il21r ( MGI:1890475)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
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View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
mandible
weak weak
regionalweak expression: see section 02 03 04 05 06 07 13 14 15 16 17 18
lung
weak weak
single cellweak expression: see section 02 03 04 05 06 07 08 09 10 11 13 14 15 16 17 18 19 20 21 22
orbito-sphenoid
weak weak
regionalweak expression: see section 01 02 21 22 23
Annotation Validation: text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T31800
Entity Detected:Il21r, ( MGI:1890475)
Sequence:sense strand is shown

>T31800
GCCTCACGGTCACTTGCTTGTCTGACCGCAAGTCTGCCCATCCCTGGGGCAGCCAACTGGCCTCAGCCCG
TGCCCCAGGCGTGCCCTGTCTCTGTCTGGCTGCCCCAGCCCTACTGTCTTCCTCTGTGTAGGCTCTGCCC
AGATGCCCGGCTGGTCCTCAGCCTCAGGACTATCTCAGCAGTGACTCCCCTGATTCTGGACTTGCACCTG
ACTGAACTCCTGCCCACCTCAAACCTTCACCTCCCACCACCACCACTCCGAGTCCCGCTGTGACTCCCAC
GCCCAGGAGACCACCCAAGTGCCCCAGCCTAAAGAATGGCTTTCTGAGGAAGACCCTGAAGGAGTAGGTC
TGGGACACAGCATGCCCCGGGGCCCAGTGGCTGCCTTACTCCTGCTGATTCTCCATGGAGCTTGGAGCTG
CCTGGACCTCACTTGCTACACTGACTACCTCTGGACCATCACCTGTGTCCTGGAGACACGGAGCCCCAAC
CCCAGCATACTCAGTCTCACCTGGCAAGATGAATATGAGGAACTTCAGGACCAAGAGACCTTCTGCAGCC
TACACAGGTCTGGCCACAACACCACACATATATGGTACACGTGCCATATGCGCTTGTCTCAATTCCTGTC
CGATGAAGTTTTCATTGTCAATGTGACGGACCAGTCTGGCAACAACTCCCAAGAGTGTGGCAGCTTTGTC
CTGGCTGAGAGCATCAAACCAGCTCCCCCCTTGAACGTGACTGTGGCCTTCTCAGGACGCTATGATATCT
CCTGGGACTCAGCTTATGACGAACCCTCCAACTACGTGCTGAGGGGCAAGCT
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:5315350), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 60135. Forward Primer - name:060135_F_IRAV98_e11_Il21r, sequence:GCCTCACGGTCACTTGCT; Reverse Primer - name:060135_R_SP6_IRAV98_e11_Il21r, sequence:TAGCTTGCCCCTCAGCA. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_010049 same experiment
 EMAGE:31306 same embryo
 EMAGE:31207 same embryo
 EMAGE:31253 same embryo
 EMAGE:29436 same embryo
 EMAGE:29426 same embryo
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS