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EMAGE:31630

Stxbp5l ( MGI:2443815)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:31630 EMAGE:31630 EMAGE:31630 EMAGE:31630 EMAGE:31630
euxassay_011926_01 euxassay_011926_02 euxassay_011926_03 euxassay_011926_04 euxassay_011926_05
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euxassay_011926_06 euxassay_011926_07 euxassay_011926_08 euxassay_011926_09 euxassay_011926_10
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euxassay_011926_11 euxassay_011926_12 euxassay_011926_13 euxassay_011926_14 euxassay_011926_15
EMAGE:31630 EMAGE:31630 EMAGE:31630 EMAGE:31630 EMAGE:31630
euxassay_011926_16 euxassay_011926_17 euxassay_011926_18 euxassay_011926_19 euxassay_011926_20
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euxassay_011926_21 euxassay_011926_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
cerebral cortex mantle layer
weak weak
regionalweak expression: see section 04 05 06 07 08 09 10 11 12 14 15 16 17 18 19
midbrain mantle layer
weak weak
regionalweak expression: see section 06 07 16 17
diencephalon lateral wall mantle layer
weak weak
regionalweak expression: see section 07 08 09 10 11 12 13 14 15 16
rest of cerebellum mantle layer
weak weak
regionalweak expression: see section 06 07 08 09 14 15 16 17
Annotation Validation: text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T37098
Entity Detected:Stxbp5l, ( MGI:2443815)
Sequence:sense strand is shown

>T37098
TTACTGGTCATGCTGATGGAACAATAAAATTTTGGGATGCTTCAGCAATGACACTGCAGATGTTGTACAA
GCTAAAAACTTCCAAAGTGTTTGAAAAGCAGAAGGCAGGAGAAGGCAAACAGACGTGTGAACTTGTAGAG
GAAGATCCCTTTGCTGTGCAGATGATCTACTGGTGTCCAGAGAGCAGAATATTTTGTGTCTCTGGAGTCT
CTGCATATGTCATAATTTATAAATTCAGCAGACATGAAGTCACAACAGAAATAGTGTCACTAGAGGTACG
ACTTCAGTGTGATGTTGAAGACATTATTACTCCTGAGCCAGAAACAAGCCCTCCATTTCCAGATCTCTCC
TCTCAACTTCCTCCTTCAAGGAGTCTTTCTGGAAGCACTAATACTGTGTCTAGTGAAGGAGTGACAAAGG
ACAGCATCCCGTGCCTCAGTGTTAAAACACGGCCAGTACGAATGCCGCCGGGCTATCAAGCAGATCTTGT
TATTCAGTTGGTGTGGGTAGATGGTGAGCCTCCTCAGCAAATTACCAGCCTTTCTATAAGCTCAGCATAT
GGAATAGTGGCATTTGGAAACTGCACTGGGCTGGTTGTGGTGGATTTCATACAGAAGACAGTGCTATTAA
GCATGGGGACCATTGACCTCTATAGATCAAGTGACCTGTACCAGCGACAGCCCCGGTCTCCTCGAAAGAA
CAGGCAGTTCATTGCAGGCTTAACAG
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 88801. Forward Primer - name:088801_F_cDNA_Stxbp5l, sequence:TTACTGGTCATGCTGATGGAAC; Reverse Primer - name:088801_N_SP6_cDNA_Stxbp5l, sequence:CTGTTAAGCCTGCAATGAACT. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_011926 same experiment
 EMAGE:29193 same embryo
 EMAGE:29194 same embryo
 EMAGE:29212 same embryo
 EMAGE:31641 same embryo
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS