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EMAGE:32007

AI315068 ( MGI:2146407)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
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euxassay_012588_01 euxassay_012588_02 euxassay_012588_03 euxassay_012588_04 euxassay_012588_05
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euxassay_012588_06 euxassay_012588_07 euxassay_012588_08 euxassay_012588_09 euxassay_012588_10
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euxassay_012588_11 euxassay_012588_12 euxassay_012588_13 euxassay_012588_14 euxassay_012588_15
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euxassay_012588_21

View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
dorsal root ganglion
weak weak
regionalweak expression: see section 05 06 07 12 13
facial vii ganglion
weak weak
regionalweak expression: see section 03
neural retina
weak weak
regionalweak expression: see section 01 02 03 21
vagus x ganglion
weak weak
regionalweak expression: see section 06
trigeminal v ganglion
weak weak
regionalweak expression: see section 02 03 04 05 06 07 15 16 17 18 19 20
glossopharyngeal ix ganglion
weak weak
regionalweak expression: see section 06
Annotation Validation: text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T31561
Entity Detected:AI315068, ( MGI:2146407)
Sequence:sense strand is shown

>T31561
GACTCCCGCCACTCTGAAAGACAGCAGGTCCTTTTAGAATTGCTGCAGGCCGGAGGCATAGTTCAATTTG
AAGAGAGTCGGCTCATCCGCATGGCAGAAAAGGCAGAATTCTATCAAATCTGTGAATTTATGTATGAGCG
GGAACACCAGTATGACAAGATCATTGACTGCTACCTGCACGACCCATTGAGAGAGGAAGAAGTCTTCAAT
TATATCCACAACATCTTATCTATTCCTGGTCACAGTGCTGAGGAGAAGCAGTCTGTGTGGCAGAAAGCAA
TGAATCATATGGAGGAACTTGTGTCCCTGAAGCCCTGCAAAGCCGCAGAGCTGGTGGCTACTCACTTTTC
TGAGCAGATCGAAGTGGTCATTGGACAGCTTCAGAACCAGCTTTTGCTTTTCAAATTTTTGAGGAGTCTT
CTTGATCCAAGGGAAGGTGTTCATGTCAATCAGGAGTTGCTGCAGATCCCGCCTCACATTACAGAGCAGT
TCATTGAGCTGCTGTGCCAGTTCAGTCCTGACCAAGTCATACAGACACTGCAGGTCCTTGAGTGCTACCG
TCTGGAGGAAACGATTCAGATTACACAAAAGTATCAACTCCATGAAGTCACTGCGTATCTGCTGGAGAAG
AAAGGGGATGCACACGGCGCCTTCCTGCTGCTGCTGGAGAGACTGCAGAGCAGGCTGCAAGAGATGACAC
GGCAGGACGAAAATACCAAGGAGGACATCCTGCTGAAAGGTGTTGAAGATACCATGGTAGAGACAATTGC
TCTTTGCCAGAGAAATTCACAGAATTTGAATCAGCAGCAACGAGAGGCTCTATGGTTTCCACTGTTGGAG
GCAATGATGACACCACAGAAGCTGTCCAGCTCGGCTGCTGCTCCTCATCCGCACTG
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:5323126), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 31324. Forward Primer - name:031324_F_IRAV67-70_P20_AI315068, sequence:GACTCCCGCCACTCTGAA; Reverse Primer - name:031324_R_SP6_IRAV67-70_P20_AI315068, sequence:ACAGTGCGGATGAGGAG. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_012588 same experiment
 EMAGE:31979 same embryo
 EMAGE:30561 same embryo
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS