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EMAGE:6444

Fsip2 fibrous sheath-interacting protein 2 ( MGI:2664111)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:6444
euxassay_016394_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:6444Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
6444_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:6444_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T45310
Entity Detected:Fsip2, fibrous sheath-interacting protein 2 ( MGI:2664111)
Sequence:sense strand is shown

>T45310
CTTGAGTATGGAAACCCCAGAGAGAGCAATAGCAGAAATAATGGACATTGTTACAACATTAGTAAAATCA
ATTGTTTTTGAGTTCACTTCATCTGAGATTTTAGTTGCAGAACATTTGGATGAAAGTCTATGGTTTTCAG
AGACATATAAAGAAATGGTTCAAAAAACAGTCAACTCAGTTTATGGAAATATATTTTATGAATATAAATC
TCTGACTCAACTACACAGGGCTGTACAATATGACACCTCAGGTTTTGGAGGGAAAATGTATCATTTTCTA
TTGGAAGAAATGTATGATTATCAGGTGCAGTCATTAGTTTCAGGAGAATTAATGCCTTCTTGCTATGCTT
CACCTCAATCTGCAAATATCATCAAAAATGTCCTCAATGTCATCTTGAAGGATACCAATGCATTACCATC
ATGTATTACAGTGCTCCCTTGTTCTCTGATAGAAAATATGATTTACAAGCTTTTAGAAAACATCTTTCCT
TCAGATGACACTACAAATGAACTAAAGAAGGAGGAGAAGGAGGAGGCTGGGCCAGATGATGTTGATGAGT
TCATGGCTGCAGCTTCAAAACTGACTGATGAAATTATACAAGAAATTTCTGAACATGAGATCAGGTTTGC
CAATGCAGAGGATACAGCCAGTATGATATATGAAACAACTGAGAATTTCATCGACTCTGTATGTAATAAT
ATTTTGAAGAACTCTGAATTCCAAGCAGAAGTACAGAAAGATGCACACAAAAAGGGAGGTTCATTTCTCA
GTAAAATAGCTGGTTCAATTATTAAAGAAATCATGGATCATTATTTGCAGTTATTTTTATATGGTGAAGG
CTCACATTCAAGTAAATTACCTCATTTTGGTGGTGCTTCTGTTGTTGCTAAATCTGGGAAAGAAAAGGCA
CC
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from genomic DNA prepared from tail-tips of two wild-type C57BL/6J mice), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 199157. Forward Primer - name:199157_F_exon_Fsip2, sequence:CTTGAGTATGGAAACCCCAGAG; Reverse Primer - name:199157_N_SP6_exon_Fsip2, sequence:GGTGCCTTTTCTTTCCCAGAT. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:6446 same embryo
 EMAGE:6445 same embryo
 EMAGE:6448 same embryo
 EMAGE:6443 same embryo
 EMAGE:6447 same embryo
 EurExpress:euxassay_016394 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS