EMAGE mouse gene expression spatial database

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EMAGE:6488

Aif1l allograft inflammatory factor 1-like ( MGI:1919598)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_002250. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_002250_01	euxassay_002250_02	euxassay_002250_03	euxassay_002250_04

euxassay_002250_05	euxassay_002250_06	euxassay_002250_07	euxassay_002250_08	euxassay_002250_09

euxassay_002250_10	euxassay_002250_11	euxassay_002250_12	euxassay_002250_13	euxassay_002250_14

euxassay_002250_15	euxassay_002250_16	euxassay_002250_17	euxassay_002250_18	euxassay_002250_19

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

6488_wholemount_strong.wlz

6488_wholemount_moderate.wlz

6488_wholemount_weak.wlz

6488_wholemount_possible.wlz

6488_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:6488_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

hypothalamus ventricular layer

weak

regional

weak expression: see section 12 13

diencephalon lateral wall ventricular layer

weak

regional

weak expression: see section 12 13

olfactory cortex ventricular layer

weak

regional

weak expression: see section 10 11 15 16

telencephalon ventricular layer

weak

regional

weak expression: see section 03 04 05 06 07 08 09 10 11 12 14 15 16 17 18 19

midbrain ventricular layer

weak

regional

weak expression: see section 09 10 11 12 13 14 15

basisphenoid bone

weak

regional

weak expression: see section 01 02

orbito-sphenoid

weak

regional

weak expression: see section 07 08 09 18 19

viscerocranium

weak

regional

Expression in the turbinate bone.

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T3269
Entity Detected:	Aif1l, allograft inflammatory factor 1-like ( MGI:1919598)
Sequence:	sense strand is shown >T3269 TGGCCTCGAGGCCAGATTCGGACGAGGTGGAGTGGGGGGGAGTGCAAGAGGTGAGTACCATGTAGTCCCA GGGATTCCAGCTGGGCTCATAATTTGGCAAGTGTCAGAGGAGCCTCTGTAAAACCTTAAGTGGAAAAGAC AGGGAAGCGTTGAGCTAATGTGCTTTTCCTGTGGCTCTTGTTCCACAGTCCAATACCCAGGGTGCTGTTC CCACAGCAGTGAGAGAGAGAGAGAGTGAAGCAAACAGGGCATGGAATGGTTAGCTCCAGTTCGTCCTCTG GTCTCAACCAGTTCAGTTCAGGAGAGAGATCATTTCGCTATGACTGGCTGATTTTCAGCCCTAGGAGCTG CTTCAAATGCACAGTCTAGTTGAAGTTTAAACCCCAGCATTCCTCCCTATAAATATAAAATCCTGTCTAC CCTCACCCCATCCTTTGACTTATTTTTCTTTTAAGATTAGCATCTCTGCCCCCATTTCCTCCTGCCTTCC TTCTCTGAGCGGGCTGGGACCTTGGACTGCATTGGGTCCCTATTCTATGTGAC
Notes:	The probe template was PCR amplified from IMAGE:2780098 using vector specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:2780098 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:6485 same embryo
	EMAGE:6482 same embryo
	EMAGE:6484 same embryo
	EMAGE:6487 same embryo
	EMAGE:6483 same embryo
	EMAGE:6486 same embryo
	EurExpress:euxassay_002250 same experiment
	MGI:4823050 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source