Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:6866

Hsh2d hematopoietic SH2 domain containing ( MGI:2676364)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:6866
euxassay_002541_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:6866Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
6866_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:6866_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5049
Entity Detected:Hsh2d, hematopoietic SH2 domain containing ( MGI:2676364)
Sequence:sense strand is shown

>T5049
CCACCTTCTCTGGATGCCATGGCAGAAGCCAGGAGGCTGCCCCCACCACTACCTCCTCGGCTGGACTGGT
TTGTGCACACCCAGGCGGACCTGCTAGCCCAATCCGGGATCCCCGAGTGGTTCCATGGCACCATCTCCCG
AGAGGCTGCTGAGAACATGTTGGAGTCACAACCCCTGGGAACTTTTCTTATCCGAGTCAGCCACAGCCAT
GTGGGCTACACCCTTTCCTACAAAGCCCAGACTTGCTGCCGTCACTTCATGGTGAAACTTTCAGAAGATG
GGACTTGCACCTTCGCTGGGGACCACATGACCCACGCCTCTCTGCATGCCCTGGTCACCTTCCACCAACA
AAAGCCTATTCGGCCATTCGGGGAGCTGTTGACCCAGGCCTGCGGGCAGGAGGATCCAGCAAACGTGGAC
TATGAAGATCTCTTCCTATACTCAAATGCCCTGGTTCAGGATGCTGAAAGCCAATTTCTGAGAACGGAAG
TTCAAAGGTCTTCTTCCTGCCCACCTGAGGAGGCTTCTGAAAGGAAGCCATCCACAACAACTAAAGGAGA
ATTCGCATCAGCTTCCTGCTCCCCAAAAGCCCTTTTCGAGGATTCTGGACAGAAACTGTGGAAGAACCTG
AGGTCCCTACCTCAGACTAGCCAGAGGGTGAAACAGCAACTCACTTCACACCTGTCGGCCATGAACCTGC
TGGGGGATGCCAGGCGAGTGGCACAGCAGCACCACAGCCCTGTGACTCGAGCATTCAGTTGGGACAGTAC
TAGCCACTCCGAGGACCCCTGTGCAGCCACCACGTCTCTTCAAAACCCTGCAGAACCCCAGGCCCTGAGA
GGCAGAGAAGCCACCTTCAGGGACTCCAGGCCTGCCAGCTGGAGGAAGGCATTCTCAGGGATCAAAGCCT
GGCGTGGAAAGGTGGTAAGGGCCCTGTCAGCCCAGGAGCCTGTGGACTTTCCAGAAGCCCAGGGCTGGTT
GCCTGAGGAATACCTTCCACCACCACCTTTCGCCCCTGGGTACTGATAGAACTTTCTGTATCTTGGGTAT
TCCTCATCTCTCCTTTAAGTCCCATCCTTGTCCTCACAGCCAGAGAACTGTGCTGAAGAGGTTAAGGGGC
TGAATCCTGCAGGTGCCAGCTAAGGGAGCTGATTGTCCTAATAATAATAGAATTACTGCTACCTCTTTAG
GGACCTGGTGGAATGGCCCAGTGGATAAAAGGATAAAAGAGCTTTCAGCCAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5316178 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5316178 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:6869 same embryo
 EMAGE:6867 same embryo
 EMAGE:6868 same embryo
 EMAGE:6871 same embryo
 EMAGE:6870 same embryo
 EurExpress:euxassay_002541 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS