EMAGE mouse gene expression spatial database

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EMAGE:6878

Csnk1d casein kinase 1, delta ( MGI:1355272)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_004403. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_004403_01	euxassay_004403_02	euxassay_004403_03	euxassay_004403_04

euxassay_004403_05	euxassay_004403_06	euxassay_004403_07	euxassay_004403_08	euxassay_004403_09

euxassay_004403_10	euxassay_004403_11	euxassay_004403_12	euxassay_004403_13	euxassay_004403_14

euxassay_004403_15	euxassay_004403_16	euxassay_004403_17	euxassay_004403_18	euxassay_004403_19

euxassay_004403_20	euxassay_004403_21	euxassay_004403_22	euxassay_004403_23

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

6878_wholemount_strong.wlz

6878_wholemount_moderate.wlz

6878_wholemount_weak.wlz

6878_wholemount_possible.wlz

6878_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:6878_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T6436
Entity Detected:	Csnk1d, casein kinase 1, delta ( MGI:1355272)
Sequence:	sense strand is shown >T6436 GCGATGGCGGCGGCTCCTTTAGGCAGCTGAAGGGGGATTTAGGCCCGGAAGATCCGAGTCCATCCGCGGC GGGGAGAGGGCGAGCGGGGCCGGCAAGGGCCGGAGCAGCGGCGGCGGCGCTCGGACTGTCCCATCCGCCC CGTATTGAGGCGCTGAGAGCGACGGGGCGACCGGAAAGCGATGGTGAAAGCGGGGCCGTGAGGGGGGCGG AGTCGGACCGGACCCGCAGTAGCGGCAGCAGCGGCGCCGCCTCCCGGAGCGCAGACCCAGGAAGCGGCCG GGCGGGCAGTAGCGAGCCGCACCGCTGCCATGGAGCTGAGGGTCGGGAACAGGTACCGACTGGGCCGCAA GATCGGCAGCGGCTCCTTCGGAGACATCTATCTCGGTACGGACATTGCTGCGGGAGAAGAAGTTGCCATC AAGCTTGAATGTGTCAAAACCAAACATCCTCAGCTCCACATTGAGAGCAAGATCTACAAAATGATGCAGG GAGGAGTGGGCATCCCTACCATCAGATGGTGTGGGGCTGAGGGGGACTACAATGTCATGGTGATGGAGCT ACTGGGACCCAGCCTGGAAGACCTGTTCAACTTCTGTTCAAGGAAGTTTAGTCTCAAAACTGTTCTGTTG CTTGCTGACCAAATGATAAGTCGTATTGAGTACATTCATTCGAAGAATTTTATCCACCGAGATGTGAAGC CAGATAACTTCCTCATGGGGCTGGGAAAGAAAGGCAACCTGGTCTACATCATTGACTTTGGGCTGGCCAA GAAGTATCGGGATGCACGCACCCACCAGCATATCCCCTATCGAGAGAACAAGAACCTCACAGGGACAGCA CGCTATGCCTCCATCAACACGCACCTTGGCATTGAACAATCTCGAAGGGATGACTTGGAGTCTCTGGGGT ACGTGCTGATGTACTTCAACCTGGGCTCTCTCCCCTGGCAGGGGCTGAAGGCCGCCACCAAGAGGCAGAA GTATGAGAGGATCAGTGAGAAGAAGATGTCCACTCCCATTGAAGTGCTGTGCAAGGGCTATCCTTCTGAA TTTGCCACATACCTGAATTTCTGCCGTTCCTTACGTTTTGATGACAAACCTGACTACTCCTACCTGAGAC AGCTCTTCAGAAATCTGTTCCATCGCCAAGGCTTCTCCTACGACTATGTGTTCGACTGGAACATGCTCAA ATTTGGTGCCAGCCGGGCTGCAGATGATGCTGAGCGGGAACGCCGGGATCGAGAAGAACGATTAAGACAC TCCCGGAATCCAGCCACTCGTGGCCTCCCTTCTACAGCTTCCGGCCGTCTGCGGGGAACCCAGGAAGTGG CTCCCCCAACGCCCCTTACCCCTACCTCACACACGGCCAACACCTCTCCGAGGCCTGTCTCTGGCATGGA ACGAGAACGGAAAGTGAGTATGCGGCTGCACCGTGGGGCCCCAGTCAACGTCTCCTCATCTGATCTCACG GGCCGACAAGATACCTCTCGCATGTCCACCTCACAGATTCCCGGTCGGGTGGCTTCCAGTGGTCTTCAGT CTGTCGTGCACCGATGAGAACTCTCCTTTTTGCTGTGAAGGGCAGACAATGCATGGCTGATCTACTCTGT TACCAATGGCTTTACTAGTGACACGCCCCCCGGTCTAAACCCGAAATGTTAACGCCGGGAGCTCTCCAGG CCACTCACCCAGCGATGCACATGGGGAATCAAAACACAAACTAAATGGACAGGCTCCAAGAGCTGCCATC GCCAGGGGCTGCCACCGTGGCCCCGTGTGAGCTCAGTTATCATGGGGCTGGGACGAAGAGCAGAGGCTGG GAGACCATTGCAGAGAGAACCCGACTCCCTGTGAAGAGCCTCTCAGCTCCCACCAGTGGTGGCGGACCTG CGCTCCCTGATGATCCCACCGCAGCTACCAGTCTTCTACTTGGTTAAGACAGTTTTGTATCATTTTGCTA AAAATTACTGGCTTAAATCTGTGTAAAGAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:3585286 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3585286 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:6882 same embryo
	EMAGE:6879 same embryo
	EMAGE:6881 same embryo
	EMAGE:6880 same embryo
	EurExpress:euxassay_004403 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source