EMAGE mouse gene expression spatial database

Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:6959

C330019G07Rik RIKEN cDNA C330019G07 gene ( MGI:2443658)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


euxassay_007199_01

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

6959_wholemount_strong.wlz

6959_wholemount_moderate.wlz

6959_wholemount_weak.wlz

6959_wholemount_possible.wlz

6959_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:6959_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T4064
Entity Detected:	C330019G07Rik, RIKEN cDNA C330019G07 gene ( MGI:2443658)
Sequence:	sense strand is shown >T4064 CAGACTTCTCAGCCCATGTACTGTGCCTGCCAAGCCATTGGAACCTGAAACCGTAGCTAGCGAGAACTTG CGCAGCCACATACCAAAGCCGAAGGCTACTCTGTGCCATTCCTTGAGGAGCCGGAGTTGTAGGAAGCCTA CCAAAGAATCAGCCTTACTAAGCAAGCTGTCTGTCCTTGCCTCCAGACTGACAACGGCAACAAAGCCCCA GGAACTTAGATGTCGGCGGGATTCCTCTTCCCTTGTTCCATTGGCTAAAAACTACAAGCGCCTCAGATAT AAAAAGCTCCTAGATGGATTTTCACATAATGCAATGCAGCTGGACCCATATTTGGCAGCTACTGGGTGGA ATAGAGGGTCTAACAGTAGGCCCTTGGCACTTTATTCTCTTGAAGCTGTTAAAATGAGCTTCATAGATTT GAGCAACAAGATGCCATCACTGCTGTTTGGTACGGAAAACGTCCCATTTTCCTTTCATGTGAAATCAGTG TCCAGCTGCATGGCTGAGTCCTCCAGGACTTTTCCTGAGCACTGCGCTCCATCGAGGCTTGCCTTAACAG AGGCCTCCCAGTGCTCAGCTCCAGCTCCCAAGTGGACCTTCTCTTTTTTCTTGTCCCATGGTTGCCCTGG GATGGCCACATTCAGGGAAGACACTGGCCTCAGTAGTCAGACACACACTCAGGCTCCTCTCCAAGAATAT GGAGGCACTGCCATAGTTCAGACCAGGGCAGACCGCTCTGGCCTTGGCCTTCACACACTTCTAGCACTTT GTTCACCCGGATGTTACCGAATCTGGACAAAAAGACGGAACTTCTCCAGTAATATGCCTATCATGCAGAG GCTCTTCCTGACCCAGTTTACACAGGGCCTAAAAGGGTTAAGGTCTCCAGCCTCTATAGCAGATAAGGTC TTCTGTTCTCTGCCCTACTCGGTGGGCCGGGTGTTGTCCCTTTGGAGCCAGCACGGGCCCTCTTGTACCT TCAAATTGCCAGCTCTTCATTCCACCCCTAGCAAGCAGCAGGGGAGCCTGAACGCCCTGAGCAGCCACAC CACCATACCAAATGTGCCTCTTCCAGGCATGGGAGCTGCCCACACCACCAACAGCAGTCACCTGAGGCTA GAGCCTGTGTTTCCTGCCTTGGTGCCAAAGTCTTGCTTGGTAACAGAAGCCGCTGTCAGCACACTGCTGC TCTCTGCCTCTGAGCTCGCAGTTCCTGGCTGTGATGAGCTGGATGGTGTGTCAGCAGCCTGCCCCCGACC ACAGAGCAGCCCTGCACAGCAGAAAGAGGCTGAGCCAGAGAAGAGACCAAAGAAAGTCTCACAGATCCGC ATCCGGAAAACCATTCCTAAACCAGATCCCAACCTTACCCCAATGGGCCTGCCTCGGCCCAAAAGGTTAA AGAAGAAGGAGTTTAGTTTAGAGGAAATCTATACAAACAAGAATTACAAGTCTCCTCCTGCGAGCAGGTG TTTAGAGACCATCTTTGAGGAACCCAAAGAACGAAATGGTACCCTGATCTCTATCAGCCAGCAGAAAAGG AAGCGTGTTCTGGAATTCCAGGATTTTACCGTCCCTCGAAAGAGACGAGCTCGAGGTAAGGTGAAGCTGG CCGGCAGCTTCACCAGGGCCCAGAAGGCGGCTCTGCAGACTCAGGAGCTGGACGCTCTTCTGATTCAGAA GCTGATGGAACTGGAGACGTTCTTTGCCAAGGAGGGGGAGCAGGAGCATCAGCCAGCTGCTGAGAACAGT TCGGGGTCTCCACTTTGAACTTTTGCAGACCTCCCTGGATGAGGTTCCTTGATTTTAGCCCTGTGCCCAA ACCACTCACAATGCCCAGCCCATGAATTTTTACTTATTTCAAGGTGCAGCCTTTTTAGAAGCTGGTGAAG AAGGGCCCTCTAATTCTACTGCTGAGTCTAGAGCCTCAGGAATGCTCCCTTTCTCCTGGGGATGGTCCTG AGTGACCAGGCCACCTCCTTCCCGTCTCCCATCACTGGTGGAAAAGCCACACATCTTAAGCAACACTAGG AATCTAAGGCCTCGTTGTCTGTGTGTCCACACGAAAGCTCCTCTCCATTCATGGTGCTGCTCGCCCAAGA TGACTTAGAAACCTGGCCTGGGGAGGACCTGGCTGCCTGGTCTGTGTGTTCTCACCAGCTTGTTATGGTG ACTGAGAAAGATGAACTGGTGTGTTTCTTGACTCTGATTCTGTCTGCCCAGGACCTTTATTCTGAGAGAA TGTGTGTTTGTGTGTGTTTGTGGCTTTTCCCCATCTTTTCTCCCATCTGTGACTGCGGGTCACTAGTGCC AGAGGAGCCGTCCAGGCCCCAGCGTAAGTTGCACTTTTTAATGTTATGGTGTTGATTATTTTCATTTTTC TTCTTCTTTTGTTTTTGTATTATTGCTGCATGTTTGGGGTCTCTAAATGTGATTTTAAACCATTTTGTAA GACATTAAGGAGAAAGACAATTTACGTCTTAGGAGAATATGTGACAGGCATTGATCAGCACATGGAGGGG CAGTGTTCCCAACCATGTGTTTCAGGCAGCCCTCCCCCACCCCCAGCTTTTCATGTAGTTCACTAGAGGA AGCACTTTTCACCTCCTTCTCAGTCCTGCCCACTGAATACACATATTCATTTAGTGACGTGCATAAAAGC AGATTTCTCTCGTAACCACTTAAAAACTGTTAAGGTGGAGTGTGGGTTTCTCTGAAATGTTGGTATATGA TGAAGTTAGCAGTGGTGTCAGAGGCTGACCAAGAGTGTTTTCAGCTGCTAGAGTGCCTGGTTCTGTCAAG GGCCAGAGCCAGTGCTCTCTGAGAGTGCCTCGTGGACTCTGCTCCCTCGTCAAACCTACTGGAAAGGTTT GCATGCTACAAGTAGCACAGTTCCTAGGTTTGCGCCCAGAGGAGTCTGCAGGCGGTAGGCTGCCGTCTGT CGTCTGAGCAGCAGGCCCTCAGAGCTCACCCTCCCCAGTGTCCTTACTGTGCTCCTTCCTCTCCTGTGTG TTCTCATCCCACCCTCTCTCCCATTCATTCTTCACACCTACCGCTCAGAGGTCAGAAGTTCAAACTGCTT GGCTGATGGCTAAGATGCTCAAGCTAGCTGCTGAACAATGCTCATTTCTTCCCATTCTCCTGGCTTGGTC CAGGGACATTTCTCTGTTCGTCTGTAGAGAAGAGTGAGCAGTGCTGTCCTGGAATGTTGGCCAACGCTTC TACGATTCTTTCATTCCCCATTTGTCAGTGGCTAAGGAGAAGGGGCACCACCAGTTCAGGGTCTTTATGT GCCTTTCCTTTGCGGGTTGGTGGTCTGGGCCACCCTGAAACAGTTAAACTGGACATAAGTATGGGGAAAC GTATCATGTCCTTCACCTCCTCAGCTGTTTAAATAAGTTAACACACACCTGCTGGTGTATGGAGACTTGA AGGTCACAGCTCTATCACAGAAGAGAACAAGCTAGTTTGCACGATGGTCTTCAGCAGTGTATGCAGATCC TGGTTTACACATGATGCCCAGACCATACACACGTGACCTGTGTTCACCTGAATCTCTCTCTCCCTCGTTG GGGCAGGAGTTTTAGTTACTCAGTGCTTCTGAACTCTGTGTTGTTACTTCAGGGACTGAAATGAGTTACA CATTTTGCCCTTCTACAAGTACATCTAAGACACTGTACATTAGACAGCTTGCAAGCTAGTGGGCAGCAAA CAGCCTTTCATCAGTTTAACCACCATGGTTACTGGGGCATCAGATTACCCCAAAAAGGTGAGGTGTCCAC AGCTGGGGTACCACCAGTATACAGACCTTTAGAATTTGTCCATGACTAGTGTGGCATGTAAGAGGCTGGA AACACTGGTCTGGACTCTTAGCATCTCGGAGCACAGGACTTGTCCTGGGAATGGAAGAGGAAATCTGCCA TCTTGGTCTGCCCTCCAGCTCAGAACTAAGAGACTCAGCCACACCTGTCTTACCATCATGTTTCACAGTG GTCAGCCAGCCTCAGAGACACCTTAGTGTCCTCAGAACCTTGGTCTTTGACAATGACTGGAGGTGGTGGC TGCTGGCATGTCACCTGCCAAACCTATAGAGTGGTTCTGTAAAGGTAGAATTTCTGAGGATGGGGACTTG CCACTCAAGTGATGAGAAGCTGACATTAAGCACAACATACCTAGCTGTAGCTCACCTCCAGAAGTTTAGT GTTTTCATGATTATGGGGAAAGAAGACAAATTTCAGGTTCAGCCAGATTTCAGTCGTTTCCTTGGCCACC TTTCAGTCTCTCGCCAGAGCAGCCTCTTCCCTCACTAGTGCCTGTCTTCTTTTCCTCCCCTGCTGTCCCA TCCCGCCTCTCCACCCATCTAGTTGTACCTCATCACCTGTTAAAGCAGATTGTGTCTGTCTTCCTGCTGC CCTTACTATAAGAGCTGACTGAGAGAGGTGCAGTGGGAAGAGATGAAGCTTTTTTGCCTTACTGGAGCCT GAAGAGCTCAGAAACTCATGCTGTGAATCCTAAACTCTGTGCTCCTCCAAGAGCTGTGAAAATCATGACT TTTTTTTTTTTTTTCCACAATTTTGCCTGAAAGGGTCTTCTGTGAGGGCTCCAGAGCCAGCCTGAGGTCA GTTCTAGATCCCACCCTCTGGGCATCCTTCCCCTGGGTGTGTCCTCTGCCCACCAGGCTAAGAGCAGCAG CAAGTCTGCAGGGCTGTGGCAGCAGGTCCGAGGCTGCAGTGCAGCCAAGTGGACCCAGCCCTCCATCTCC CCAGGCTGGGGCTCAGTCTCTTCTGTACCATGTGCATTAAGATCTGTGCAAGACCAACTTTTAGGTTGTG ATACTTTCCTCCTGGTACCTGGGGGGAGGGGAGTATGCAGTTGGTGCTTTCTTTAATATCCTTGGTTTGT TTCTATAGCTTTTCCCCTGGTATCATGAAAAGGGCCTTTTTAATGACCACATTGTGGGTGGCTGTATCCA AAGCATAAATAATTGGCCAGTGGTATGGAATGTCCTCACCTGCATTCCTGTCAGGAGAGGGCTACTTTCC TGGACTGAACTATATAGAACTGGCTAGGAAGATGAGTTAAATTTTGTTCAAATCACAATTAATATTCCAA TTTAGCCACACTTTGACCAGCAAAAGCCATCTTGGTTGTGAAGCTGGGGCCCTCATTTAGCCGCCATCCA GCCCAGCATGCTAAAATCTGAGGCTCATTCTGTCTTTATAAGACTGTCTGGTGTTGGTTGGATTTTAATT CTCAACAAGAGGCCCCCTTGAACTAGGATCTGGGCCAGTAAGTTGCTGTCCCTAGTGTTCCTGTATTATC ATGGCTAATAGTTCAGTGAAATGTGTCCATCTTTGGTAATGCTAGTATACATGATACCCTACAGTTCCTT TTCTGTTTGATAGTTTGTGACTCTAAATGCCCACTGTTACATTAATTAATTTATGGAAATAAATTTTTCT TGAAAACCAAAAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:30531815 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30531815 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:6960 same embryo
	EMAGE:6961 same embryo
	EMAGE:6962 same embryo
	EurExpress:euxassay_007199 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source