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EMAGE:7193

Sh3yl1 Sh3 domain YSC-like 1 ( MGI:1346118)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:7193 EMAGE:7193 EMAGE:7193 EMAGE:7193 EMAGE:7193
"Pseudo-wholemount" of euxassay_002694. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_002694_01 euxassay_002694_02 euxassay_002694_03 euxassay_002694_04
EMAGE:7193 EMAGE:7193 EMAGE:7193 EMAGE:7193 EMAGE:7193
euxassay_002694_05 euxassay_002694_06 euxassay_002694_07 euxassay_002694_08 euxassay_002694_09
EMAGE:7193 EMAGE:7193 EMAGE:7193 EMAGE:7193 EMAGE:7193
euxassay_002694_10 euxassay_002694_11 euxassay_002694_12 euxassay_002694_13 euxassay_002694_14
EMAGE:7193 EMAGE:7193 EMAGE:7193 EMAGE:7193 EMAGE:7193
euxassay_002694_15 euxassay_002694_16 euxassay_002694_17 euxassay_002694_18 euxassay_002694_19
EMAGE:7193 EMAGE:7193 EMAGE:7193 EMAGE:7193
euxassay_002694_20 euxassay_002694_21 euxassay_002694_22 euxassay_002694_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:7193Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
7193_wholemount_strong.wlz
7193_wholemount_moderate.wlz
7193_wholemount_weak.wlz
7193_wholemount_possible.wlz
7193_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:7193_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5854
Entity Detected:Sh3yl1, Sh3 domain YSC-like 1 ( MGI:1346118)
Sequence:sense strand is shown

>T5854
GGCACCATGAATAACCCGATACCTTCTAATCTGAAATCAGAAGCAAAGAAGGCTGCCAAAATATTAAGAG
AATTCACAGAAATAACTTCTAGAAATGGACCTGATAAGATCATTCCTGCCCACGTGATTGCAAAAGCTAA
AGGTCTTGCAGTTTTGTCTGTGATTAAAGCCGGGTTTCTGGTCACAGCCAGGGGAGGCAGTGGGATTGTC
CTGGCGCGTCTTCCGGATGGAAAATGGTCTGCACCTTCAGCCATTGGGATAGCTGGGCTTGGTGGAGGAT
TTGAAATAGGAATAGAGGTATCCGATTTGGTGATAATTCTGAATTATGACAGAGCAGTAGAAGCCTTTGC
AAAGGGTGGAAACCTGACCCTTGGAGGGAATTTTACTGTCGCAGTTGGGCCCCTAGGCAGGAACCTGGAA
GGCAACGTGTCCCTGAGGAGCTCCGCAGCCGTCTTCACATACTGCAAGTCCAGGGGCCTCTTTGCTGGTA
TCTCCCTGGAAGGAAGCTGTCTGATTGAGAGGAAAGAAACCAATCGGAAATTTTACTGTCAGGACATTCG
AGCTTACGACATTTTATTTGGAGATGTTCCGCAGCCTGCTCAAGCAGAAGATCTTTATGAAATTCTTAAT
TCCTTCACTGAGAAATATGAAACTGAAGGGCAGCGCATCAATTTGAAGAAAGTAGCCCGGGAGCAGAGGA
AGGCCAAAGAATTACCTCCAAAACCATCTTCAAGGCCCCAGCCAGCCCACCCACCTGTACAGCTGAATGC
TGGCTCCCAGGGTAATAGAAATGAATATAAGCTATATCCTGAGCTTTCTAGCTATCATGAGAAAACTGGC
AATTTGAATCAACCAATAGAAGTGACAGCATTATACTCTTTCGAAGGACAACAGCCAGGAGACTTGAATT
TTCAAGCAGGAGACAGAATCATAGTTATATCAAAGACCGACTCAAATTTTGATTGGTGGGAAGGAAAACT
TCGAGGTCAAACTGGAATTTTCCCAGCCAACTATGTAACTATGAATTAAAGTTCATGCTATTTTGTTACT
TGATAATTACACAAAAATATTTCTACACAGACAGGATTCACTGTTTACTGCAAACGTCAAGCACACCCTT
GCTCTGCAAATGTTTTTATCCAGGTGTAAAATATTTTCTCTGCATATAAATAAATGGTTAAGTTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA
Notes:The probe template was PCR amplified from IMAGE:3154966 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3154966 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:7191 same embryo
 EMAGE:7189 same embryo
 EMAGE:7192 same embryo
 EMAGE:7190 same embryo
 EMAGE:7188 same embryo
 EurExpress:euxassay_002694 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS