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EMAGE:7444

Rabl5 RAB, member of RAS oncogene family-like 5 ( MGI:1914536)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:7444 EMAGE:7444 EMAGE:7444 EMAGE:7444 EMAGE:7444
"Pseudo-wholemount" of euxassay_004533. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_004533_01 euxassay_004533_02 euxassay_004533_03 euxassay_004533_04
EMAGE:7444 EMAGE:7444 EMAGE:7444 EMAGE:7444 EMAGE:7444
euxassay_004533_05 euxassay_004533_06 euxassay_004533_07 euxassay_004533_09 euxassay_004533_10
EMAGE:7444 EMAGE:7444 EMAGE:7444 EMAGE:7444 EMAGE:7444
euxassay_004533_11 euxassay_004533_12 euxassay_004533_13 euxassay_004533_14 euxassay_004533_15
EMAGE:7444 EMAGE:7444 EMAGE:7444 EMAGE:7444 EMAGE:7444
euxassay_004533_16 euxassay_004533_17 euxassay_004533_18 euxassay_004533_19 euxassay_004533_20
EMAGE:7444 EMAGE:7444 EMAGE:7444 EMAGE:7444
euxassay_004533_21 euxassay_004533_22 euxassay_004533_23 euxassay_004533_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:7444Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
7444_wholemount_strong.wlz
7444_wholemount_moderate.wlz
7444_wholemount_weak.wlz
7444_wholemount_possible.wlz
7444_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:7444_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5765
Entity Detected:Rabl5, RAB, member of RAS oncogene family-like 5 ( MGI:1914536)
Sequence:sense strand is shown

>T5765
TGCGGCCCAGACTGGCGGACGCGGCGGGGAGCTTAGCGCGCTTTGGTGGTGGGCTTCCGCGGGTTCGTGT
TAACGGACAGCGATGCTGAAGGCTAAGATCCTCTTCGTGGGCCCCTGCGAGAGCGGCAAAACAGTGTTGG
CCAACTTTCTCACTGAATCTTCGGACATCACTGAATATAACCCAACACAAGGTGTGAGGATCCTAGAGTT
TGAGAACCCACATGTCACCAGCAACAACAAAGGCACGGGCTGCGAATTCGAGCTCTGGGACTGTGGTGGC
GACTCTAAGTTTGAGTCCTGCTGGCCCGCTCTGATGAAGGATGCTCATGGAGTGGTGATTGTCTTCAATG
CTGATATCCCAAGCCACCTAAAGGAAATTGAAATGTGGTATTCCTGTTTTGTCCAGCAACAGTTCCTCCA
AGACAGTCACTGCATGCTTGTGGCCCACCACAAACCGGGCTCCGGAGGAGAAAGGGGCAGCCTGGCTTTG
TCTCCCCCCTTGAACAAGCTGAAGCTGGTGCACTCAAACCTGGAGGAAGACCCTGAGGAGGTCCGGGTGG
AGTTCATCAAGTATTTAAAAAGCATCATCAACTCCATGTCGGAGAGCAGAGACCGCGAGGAGATGCTTAT
CATCACCTAGTGTCCAGTGCCACCGCCTCCCAAAGGACGCTGACTAACCCCACCCAGCCGCTGACGCACC
CTTCTCCTCTAGAAGGCTCCAGGAAGATCAGGCATGGTGCCACACGCCTGTGATCCCAGCTCTCAGGAGG
CTGAGGTAGGAGGAGGGTTGAGAGTTCAAGGCCAACCCTGGCTGCACAGGAGCCCTTATCTCCTCCCTTC
TCCAGAAGCAAAAAGCTGCCCTGCTTGCCTGTCTCGGTTGTCATGCATAAACATGTCCTTCCTTCCGGCA
AAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:2651447 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:2651447 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:7447 same embryo
 EMAGE:7443 same embryo
 EMAGE:7445 same embryo
 EMAGE:7446 same embryo
 EurExpress:euxassay_004533 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS