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EMAGE:7462

Nipsnap1 4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans) ( MGI:1278344)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:7462 EMAGE:7462 EMAGE:7462 EMAGE:7462 EMAGE:7462
"Pseudo-wholemount" of euxassay_005226. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_005226_01 euxassay_005226_02 euxassay_005226_03 euxassay_005226_04
EMAGE:7462 EMAGE:7462 EMAGE:7462 EMAGE:7462 EMAGE:7462
euxassay_005226_05 euxassay_005226_06 euxassay_005226_07 euxassay_005226_08 euxassay_005226_09
EMAGE:7462 EMAGE:7462 EMAGE:7462 EMAGE:7462 EMAGE:7462
euxassay_005226_10 euxassay_005226_11 euxassay_005226_12 euxassay_005226_13 euxassay_005226_14
EMAGE:7462 EMAGE:7462 EMAGE:7462 EMAGE:7462 EMAGE:7462
euxassay_005226_15 euxassay_005226_16 euxassay_005226_17 euxassay_005226_18 euxassay_005226_19
EMAGE:7462 EMAGE:7462 EMAGE:7462
euxassay_005226_20 euxassay_005226_21 euxassay_005226_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:7462Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
7462_wholemount_strong.wlz
7462_wholemount_moderate.wlz
7462_wholemount_weak.wlz
7462_wholemount_possible.wlz
7462_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:7462_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
submandibular gland primordium
moderate moderate
regionalmoderate expression: see section 05 06 14 15 16 17 weak expression: see section 04 07
brain
moderate moderate
regionalmoderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22
glossopharyngeal ix ganglion
moderate moderate
regionalmoderate expression: see section 06 07 16
trigeminal v ganglion
moderate moderate
regionalmoderate expression: see section 02 03 04 05 06 07 14 15 16 17 18 19 20
vagus x ganglion
moderate moderate
regionalmoderate expression: see section 06 15
vestibulocochlear viii ganglion
weak weak
regionalweak expression: see section 07 15 16
trigeminal v nerve
moderate moderate
regionalmoderate expression: see section 14
spinal cord
moderate moderate
regionalmoderate expression: see section 09 10 11 12 13 14
cervico-thoracic ganglion
moderate moderate
regionalmoderate expression: see section 08 13 14
cervical ganglion
moderate moderate
regionalmoderate expression: see section 07 14 15
thoracic ganglion
moderate moderate
regionalmoderate expression: see section 10 12 13
dorsal root ganglion
moderate moderate
regionalmoderate expression: see section 06 07 08 09 10 11 13 14 15 16
stomach
weak weak
regionalweak expression: see section 02 03 04 05 06 07 08
midgut
moderate moderate
regionalmoderate expression: see section 03 04 05 06 07 08 09 10 11 12 13 14 15
lower jaw incisor
moderate moderate
regionalmoderate expression: see section 12 weak expression: see section 08
lower jaw molar
moderate moderate
regionalmoderate expression: see section 05 06 weak expression: see section 15 16
upper jaw incisor
moderate moderate
regionalmoderate expression: see section 12 weak expression: see section 08
upper jaw molar
moderate moderate
regionalmoderate expression: see section 05 06 weak expression: see section 15 16
liver
moderate moderate
regionalmoderate expression: see section 01 02 03 04 05 06 09 10 11 12 13 14 15 16 17 18 19 20 21 22 weak expression: see section 07 08
metanephros
moderate moderate
regionalmoderate expression: see section 09 10 14 15 16 17 18 weak expression: see section 07 08 not examined expression: see section 02 03 04 05 06
lung
moderate moderate
regionalmoderate expression: see section 02 03 04 05 06 09 10 11 12 13 14 15 16 17 18 19 20 weak expression: see section 07 08
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7587
Entity Detected:Nipsnap1, 4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans) ( MGI:1278344)
Sequence:sense strand is shown

>T7587
CATGGCTCCGCGGTTGTGCATCATCTCTGCAGCGGCACGGCGGCTATTCACGAAGCCGAGACCCCGTGCT
GGGGACCTCGCGGCTGCGGGTGCTGTGCGCTTCTATTCCAAGGACAGTGAAGGAAGCTGGTTCCGTTCCC
TCTTTGTCCACAAGGTGGATCCTCGGAAGGACGCCCACTCCACTCTGCTGTCCAAGAAGGAGACTAGTAA
TCTCTACAAGATCCAGTTTCACAACGTGAAGCCCGAATGTCTGGATGCCTACAACAGTCTGACGGAGGCT
GTACTGCCCAAGCTGCACCTGGATGAGGACTATCCCTGCTCGCTTGTGGGCAACTGGAACACGTGGTACG
GGGAGCAGGACCAGGCAGTACACCTATGGCGGTTCTCAGGTGGCTACCCGGCCCTCATGGACTGCATGAA
CAAGCTAAAAAACAACAAGGAGTACCTGGAGTTCCGGAAGGAACGGAGCAAGATGCTGCTGTCCAGGAGA
AACCAGTTGCTTCTGGAGTTCAGCTTCTGGAATGAGCCACAGCCCCGAGCTGGCCCCAATATCTATGAGC
TGAGGACATATAAACTCAAGCCAGGAACCATGATTGAATGGGGAAACAACTGGGCTCGGGCCATCAAGTA
CCGTCAGGAGAACCAGGAGGCGGTGGGAGGCTTCTTTTCACAAATAGGAGAGCTCTACGTGGTACACCAC
TTATGGGCCTACAAAGATTTGCAATCTCGGGAGGAGACTCGAAATGCGGCCTGGAGAAAGAGGGGCTGGG
ATGAAAATGTCTACTACACAGTCCCCTTGGTTCGACACATGGAGTCACGAATCATGATTCCTCTGAAGAT
TTCTCCTCTCCAGTGAAGCTGGCACTGCCTCCACCTCCTTCCCTTTCTCCTGTGGACTAGCCTGGAAAGG
AGGCGCTTCTAGGCCACCTGGCACAGTTTTCTCTGAACTCTGGAAGACTTCTGATGGGTGGTGTTCAGCT
TCGACAAAGATGACGTTTTCTGAGAACTTAGTCCGTCCGTACCCAGCTAACCTCTCTCCCATGCTGGATG
AAGAAGTTCTTAACTTCCCAAGCTGCAGAATAGCAACCTTTTAAGCTTTCACACACTTTCCTCTTAAGAT
CCGTCATCTCCAGGACATAAGTCCCCAGCTCCCAACTGTGGCCATGGCTTAGTTGCATAAAAGCAGGCAT
GACTGGCTGTTAGGAGGTATGGTGTGAAAGGGTATCAGTCCAGGTATGGCCCGGGAACTCTCTGGTGTCT
ACTTGTTAAAAAAGCAAGCCTGAGTCTTTAAAAAAAAATAAATAAAAATCCTGGAACTGCAAAAAAAAAA
AAAAA
Notes:The probe template was PCR amplified from IMAGE:4242309 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4242309 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:7464 same embryo
 EMAGE:7461 same embryo
 EMAGE:7463 same embryo
 EMAGE:7460 same embryo
 EurExpress:euxassay_005226 same experiment
 MGI:4826717 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS