EMAGE mouse gene expression spatial database

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EMAGE:7474

Zdhhc16 zinc finger, DHHC domain containing 16 ( MGI:1921418)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_004574. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_004574_01	euxassay_004574_02	euxassay_004574_03	euxassay_004574_04

euxassay_004574_05	euxassay_004574_06	euxassay_004574_07	euxassay_004574_08	euxassay_004574_09

euxassay_004574_10	euxassay_004574_11	euxassay_004574_12	euxassay_004574_13	euxassay_004574_14

euxassay_004574_15	euxassay_004574_16	euxassay_004574_17	euxassay_004574_18	euxassay_004574_19

euxassay_004574_20	euxassay_004574_21	euxassay_004574_22	euxassay_004574_23

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

7474_wholemount_strong.wlz

7474_wholemount_moderate.wlz

7474_wholemount_weak.wlz

7474_wholemount_possible.wlz

7474_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:7474_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T7535
Entity Detected:	Zdhhc16, zinc finger, DHHC domain containing 16 ( MGI:1921418)
Sequence:	sense strand is shown >T7535 GCGGGTCCCGGTCCGCTGGCTAGCGCTGTGGGCTGAGGGCCATGGTGGGTCAGCCTTAGCTCGGCCCGGC CTGGGTCCTGAGCTGGAAGGGGAGGCAGTGGGTGGCGGACAGGGAGACTGGGCCTAATCTGGCTGATTGA GAAGCTGGCAGGAGGCAGAAAGGATGAGCGCAGCAAATACTTGGGTGTTATCACATTGGTGAGAGTGTCT TTGCTGGCTCCTGTACAGCTGCCAGCCTTTCCTGTTCTGCATCTCTCCAGGTCATTCATTCAACAAGTAT TTATTGAATACTTCTACAAGCCAGGAGCCATGCGGGGCCAGCGAAGTCTGCTGTTGGGGCCAGCCCGCCT CTGCCTGCGCCTCCTTTTGCTCCTGGGCTACCGGCGTCGATGCCCACCTCTGCTCCGGGGCCTGGTACAG CGCTGGCGTTATGGCAAGGTTTGCCTGCGCTCCCTGCTCTACAATTCCTTTGGAGGCAGTGACACTGCCG TTGATGCTGCCTTTGAGCCTGTCTACTGGCTGGTGGACAATGTGATCCGCTGGTTTGGAGTGGTGTTTGT GGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTC CGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCT TCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAGGGCAGGAATGACATTGCTACTGT CTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACCGCAGCATCTGTAATAGGTGT GTGCTGAAGATGGATCATCACTGCCCCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGCTACTTCT TCTCTTTCTGCTTTTTCATGACTCTGGGCTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGA GGCTTATGCTGCCATTGAGACGTACCACCAGACTCCACCACCTACCTTCTCCTTTCGAGAAAGGATAACT CACAAGAGTCTTGTCTACCTCTGGTTCCTGTGCAGTTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGT GGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCG GTTACAGGCCAAGGGCAGGGTGTTTAGGAATCCTTACAACTATGGCTGCTTGGACAACTGGAAGGTGTTC CTAGGTGTGGACACAGGAAGGCATTGGCTGACCCGGGTGCTGTTACCTTCTAGTCACCTGCCCCATGGGA ATGGGATGAGCTGGGACCCTCCTCCCTGGGTGACTGCTCACTCAGCCTCTGTGATGGCCGTGTAAGCCAC AACTTGAACACTATTTGATGTTTATTGTCTCTCAAGAGCTTCCAAGGGCAGCTTTTCCTGGAATCCATGA CCATGAAGAGCCATCAGGCTTGCCTTAGAGTACTACACAGGGACAATCAAGACCAATCTTCTGCCACCTA AAAACAAGATGCAGTGTGGAGAAACTCAAGGATTGAAGTCCCTTTACTCAGGCAAATAAGTTTTAGCTCC AGCCGAGCTCTAGGTCACAGCACTGGGGCTAGACACCATCTCTTTCTTTCACTTTGGGAAAAGATCCATC AGGTATGTTGAAACTCTGGCTTCTCAACGGGACAAAGACAGTAAGCCTATTGCCAAGGTCACTGCCATTT CTCACGTGCTACAGAGGGAGCGAAAATAAAGGCATTTGATTTGTAAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:4239913 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4239913 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:7473 same embryo
	EMAGE:7475 same embryo
	EMAGE:7472 same embryo
	EMAGE:7471 same embryo
	EurExpress:euxassay_004574 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source