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EMAGE:7747

Tsta3 tissue specific transplantation antigen P35B ( MGI:98857)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:7747 EMAGE:7747 EMAGE:7747 EMAGE:7747 EMAGE:7747
"Pseudo-wholemount" of euxassay_007432. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_007432_01 euxassay_007432_02 euxassay_007432_03 euxassay_007432_04
EMAGE:7747 EMAGE:7747 EMAGE:7747 EMAGE:7747 EMAGE:7747
euxassay_007432_05 euxassay_007432_06 euxassay_007432_07 euxassay_007432_08 euxassay_007432_09
EMAGE:7747 EMAGE:7747 EMAGE:7747 EMAGE:7747 EMAGE:7747
euxassay_007432_10 euxassay_007432_11 euxassay_007432_12 euxassay_007432_13 euxassay_007432_14
EMAGE:7747 EMAGE:7747 EMAGE:7747 EMAGE:7747 EMAGE:7747
euxassay_007432_15 euxassay_007432_16 euxassay_007432_17 euxassay_007432_18 euxassay_007432_19
EMAGE:7747 EMAGE:7747 EMAGE:7747 EMAGE:7747 EMAGE:7747
euxassay_007432_20 euxassay_007432_21 euxassay_007432_22 euxassay_007432_23 euxassay_007432_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:7747Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
7747_wholemount_strong.wlz
7747_wholemount_moderate.wlz
7747_wholemount_weak.wlz
7747_wholemount_possible.wlz
7747_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:7747_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
embryo
strong strong
ubiquitousstrong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T9071
Entity Detected:Tsta3, tissue specific transplantation antigen P35B ( MGI:98857)
Sequence:sense strand is shown

>T9071
GGAACCCATCGCAGGTGCAGACCATAATGGGCGAACCCCATGGATCCATGAGGATCCTAGTGACAGGGGG
CTCTGGACTGGTGGGTAGAGCCATCCAGAAGGTGGTTGCAGATGGGGCCGGCTTACCTGGAGAGGAATGG
GTGTTTGTCTCCTCCAAAGATGCAGATCTGACGGATGCAGCCCAAACCCAAGCACTCTTCCAGAAAGTAC
AGCCCACCCACGTCATCCATCTCGCTGCAATGGTAGGCGGCCTTTTCCGGAATATCAAATACAACTTGGA
TTTCTGGCGGAAAAACGTGCACATCAATGACAACGTCCTGCATTCGGCCTTCGAGGTGGGCGCTCGCAAG
GTGGTCTCCTGCCTGTCCACCTGCATCTTCCCTGACAAGACCACCTATCCTATTGACGAGACAATGATCC
ACAACGGGCCGCCTCACAGCAGCAATTTCGGGTACTCATACGCCAAGAGGATGATTGACGTGCAGAACAG
AGCCTACTTCCAGCAGCACGGCTGTACCTTCACCGCCGTCATCCCTACCAATGTCTTTGGGCCTTATGAC
AACTTCAACATCGAAGATGGCCACGTGCTACCCGGCCTCATCCATAAGGTGCACCTGGCCAAGAGTAGTG
ACTCGGCCCTGACGGTGTGGGGTACAGGGAAGCCGCGGAGGCAGTTCATCTACTCACTGGACCTCGCCCG
GCTCTTCATCTGGGTCCTACGGGAGTACAGTGAGGTGGAGCCCATCATCCTCTCAGTGGGTGAGGAAGAT
GAAGTGTCCATCAAGGAGGCAGCTGAGGCTGTAGTGGAGGCCATGGACTTCAATGGGGAAGTCACTTTTG
ATTCAACAAAGTCAGATGGGCAATATAAGAAGACAGCCAGCAATGGCAAGTTGCGGTCCTACTTGCCCGA
CTTCCGTTTCACACCCTTCAAGCAGGCTGTGAAGGAAACCTGCACTTGGTTCACCGACAACTATGAGCAG
GCCCGGAAGTAAGGCGCGGGGCAAGCAAGTGCTCGCCTGGCGATGCCCAGTCAGTGGTCACCACCCCCAG
TTCTCGCCAAGAACTGAGGACAGTATCCAGCCACCTGAGCCATATGCTGACCTCTTTGCCAGGATCCTCC
ATGCTGCTGTCCAGTAGGGCCCATGTCCATCCTTGGGGAAAGGCCAGACCAACATTTTGCTTGTCTGCTT
CTGCCCAACCTCCATGTGTCCCTGCTGGACTAGAAACCAATAAAATGGATTTTCATGAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6818427 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6818427 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:7748 same embryo
 EMAGE:7750 same embryo
 EMAGE:7749 same embryo
 EurExpress:euxassay_007432 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS