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EMAGE:8414

Dhx38 DEAH (Asp-Glu-Ala-His) box polypeptide 38 ( MGI:1927617)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:8414 EMAGE:8414 EMAGE:8414 EMAGE:8414 EMAGE:8414
"Pseudo-wholemount" of euxassay_007267. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_007267_01 euxassay_007267_02 euxassay_007267_03 euxassay_007267_04
EMAGE:8414 EMAGE:8414 EMAGE:8414 EMAGE:8414 EMAGE:8414
euxassay_007267_05 euxassay_007267_06 euxassay_007267_07 euxassay_007267_08 euxassay_007267_09
EMAGE:8414 EMAGE:8414 EMAGE:8414 EMAGE:8414 EMAGE:8414
euxassay_007267_10 euxassay_007267_11 euxassay_007267_12 euxassay_007267_13 euxassay_007267_14
EMAGE:8414 EMAGE:8414 EMAGE:8414 EMAGE:8414 EMAGE:8414
euxassay_007267_15 euxassay_007267_16 euxassay_007267_17 euxassay_007267_18 euxassay_007267_19
EMAGE:8414 EMAGE:8414 EMAGE:8414
euxassay_007267_20 euxassay_007267_21 euxassay_007267_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:8414Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
8414_wholemount_strong.wlz
8414_wholemount_moderate.wlz
8414_wholemount_weak.wlz
8414_wholemount_possible.wlz
8414_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:8414_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T1878
Entity Detected:Dhx38, DEAH (Asp-Glu-Ala-His) box polypeptide 38 ( MGI:1927617)
Sequence:sense strand is shown

>T1878
TGGCCTCGAGCAGAATTCGGACGAGGGCTGTCCCCGAAAGTGACCACCTGACCTACCTGAATGTCTACCT
GCAGTGGAAGAACAACAATTACTCCACCATCTGGTGCAATGACCACTTCATCCACGCCAAGGCCATGCGG
AAGGTTCGGGAGGTACGGGCCCAGCTTAAGGATATTATGGTGCAGCAGCGGATGAGCCTGGCCTCATGTG
GCACCGACTGGGACATTGTCAGGAAGTGTATCTGTGCTGCCTATTTCCACCAGGCAGCCAAGCTCAAGGG
GATTGGGGAATATGTGAACATCCGCACAGGGATGCCCTGCCACTTACACCCCACCAGCTCCCTCTTCGGC
ATGGGCTACACCCCTGACTACATTGTGTATCACGAGCTGGTCATGACCACCAAGGAGTACATGCAGTGTG
TGACCGCTGTGGATGGAGAGTGGCTGGCCGAGTTAGGCCCCATGTTCTACAGTGTGAAGCAGGCAGGCAA
ATCTCGCCAGGAGAATCGTCGTCGGGCTAAAGAAGAGGCCTCTGCCATGGAAGAGG
Notes:The probe template was PCR amplified from IMAGE:597068 using vector specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:597068 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:8415 same embryo
 EMAGE:8411 same embryo
 EMAGE:8413 same embryo
 EMAGE:8416 same embryo
 EMAGE:8412 same embryo
 EurExpress:euxassay_007267 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS