EMAGE mouse gene expression spatial database

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EMAGE:8529

1300018I17Rik RIKEN cDNA 1300018I17 gene ( MGI:1914143)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_009759. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_009759_01	euxassay_009759_02	euxassay_009759_03	euxassay_009759_04

euxassay_009759_05	euxassay_009759_06	euxassay_009759_07	euxassay_009759_08	euxassay_009759_09

euxassay_009759_10	euxassay_009759_11	euxassay_009759_12	euxassay_009759_13	euxassay_009759_14

euxassay_009759_15	euxassay_009759_16	euxassay_009759_17	euxassay_009759_18	euxassay_009759_19

euxassay_009759_20	euxassay_009759_21	euxassay_009759_22	euxassay_009759_23

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

8529_wholemount_strong.wlz

8529_wholemount_moderate.wlz

8529_wholemount_weak.wlz

8529_wholemount_possible.wlz

8529_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:8529_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

brain

weak

regional

weak expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23

facial vii ganglion

weak

regional

weak expression: see section 03 04 16 17 18 19 20

glossopharyngeal ix ganglion

weak

regional

weak expression: see section 05 16 17

trigeminal v ganglion

weak

regional

weak expression: see section 02 03 04 05 06 07 08 16 17 18 19 20 21

vagus x ganglion

weak

regional

weak expression: see section 06 16

vestibulocochlear viii ganglion

weak

regional

weak expression: see section 05 06 16

spinal cord

weak

regional

weak expression: see section 06 07 08 09 10 11 12 13

dorsal root ganglion

weak

regional

weak expression: see section 04 05 06 07 08 09 13 14 15 16

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T30625
Entity Detected:	1300018I17Rik, RIKEN cDNA 1300018I17 gene ( MGI:1914143)
Sequence:	sense strand is shown >T30625 AACAGTGTCTGGAGCGGGCCCAGTCAACAGCTACCAAGCTTGGGAGAATATGCCTGAAGCCAGCCGTACC TGCGGCTCCTCCCACACCCTTGCCAACCAGCAGACACCGCCGAGTGTGTTCAGATGAAGGGGGGAAGCTG TCTCCTTTCCTGCCCCCTGAGATCTTCCAGAAGCTGCAGGTGGCAGAATCACAAAACTCTAAGAAGGAGC TGACACCACTGGAGAAGGCCTCCCTACAAAACCAGAAGCTGAGGGCCACATATGAGGCCCGGATGGCCCG TCTGGACCCCAGCCAGGCCATGCAGAAGACATCGCTGACCCTGTCTCTACAGCGGCAGATGATGGAGAAT CTGGTGATCGCCAAAGCAAGAGAAGAGACACTGCAGCGGAAGATGGAGGAGCGCCGCCTGCGCCTTCAGG AGGCTGCCAACAGGAGGTTCTGCAGTCAAGTTGCTCTGACCCCAGAGGAGCGGGAGCAGCGAGCCCTCTA TGCTGCCATCTTGGAGTATGAGCAAGACCATGACTGGCCAAAACACTGGAGAGCCAAGCTCAAGCGGAGT CCAGGAGACCTGTCGCTAGTGACCAGCCTGCTCTCCCACTTGCTCAGCCTTCCTGATCACCCAATCTCCC AGCTCCTGAAGAAGCTGCAGTGTGCGGTATACAGTGCGCTGTATCCGATTGTGAGCCGGGCTGCCACCAG TGCCGCGCCTGCCCCAGGCAGCTGCTCCCTGCCCCCAGAAGCCAACGGCCTCCTGGCCCCTGGGAGCCGT CGACTTCGGTCCTCCCAGAGCCTCTACTGCATGCTTTCCCCCTCCGAGCCCAGTGCAGCCCCACGAGTGC TGGATGGACCTCCTCCCACGCCCTCTGTCCCCACACTCCACTCAGGCCCCTTGGACAGAGAGGCAGACGG CAGCCCAGCAGGGCCCTCCTCACCCCTAGTAGATGCTTTATCCCACCTGCCAGACA
Notes:	The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:6402384), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 59929. Forward Primer - name:059929_F_IRAV115_e02_1300018I17Rik, sequence:AACAGTGTCTGGAGCGGG; Reverse Primer - name:059929_R_SP6_IRAV115_e02_1300018I17Rik, sequence:TTGTCTGGCAGGTGGGAT. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:8525 same embryo
	EMAGE:8526 same embryo
	EMAGE:8527 same embryo
	EMAGE:8528 same embryo
	EMAGE:8524 same embryo
	EurExpress:euxassay_009759 same experiment
	MGI:4822605 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source