Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:9171

BC032203 cDNA sequence BC032203 ( MGI:2673855)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:9171 EMAGE:9171 EMAGE:9171 EMAGE:9171 EMAGE:9171
"Pseudo-wholemount" of euxassay_017996. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_017996_01 euxassay_017996_02 euxassay_017996_03 euxassay_017996_04
EMAGE:9171 EMAGE:9171 EMAGE:9171 EMAGE:9171 EMAGE:9171
euxassay_017996_05 euxassay_017996_06 euxassay_017996_07 euxassay_017996_08 euxassay_017996_09
EMAGE:9171 EMAGE:9171 EMAGE:9171 EMAGE:9171 EMAGE:9171
euxassay_017996_10 euxassay_017996_11 euxassay_017996_12 euxassay_017996_13 euxassay_017996_14
EMAGE:9171 EMAGE:9171 EMAGE:9171 EMAGE:9171 EMAGE:9171
euxassay_017996_15 euxassay_017996_16 euxassay_017996_17 euxassay_017996_18 euxassay_017996_19

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:9171Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
9171_wholemount_strong.wlz
9171_wholemount_moderate.wlz
9171_wholemount_weak.wlz
9171_wholemount_possible.wlz
9171_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:9171_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T50151
Entity Detected:BC032203, cDNA sequence BC032203 ( MGI:2673855)
Sequence:sense strand is shown

>T50151
AGATCTCCAGCTCACCAAGAGCCTAGAGAAAACCTTTAAGAACATCCTGGAACTCAAGAACTCGGGGCGG
CCGCCAAGCGACCCTACGGCCAGCGGTGCGGCGGACCTGGACTTCCCCAGCTTTTCTCCAATGGCTTCGC
AGGAAAACTGCCTAGAAAAATTCATCCCGGACCACAGTGAAGGCGTTGTAGAAACGGACTCCATTTTAGA
AGCAGCTGTAAATAGTATTCTAGAGTGTTAATAGCAGCCGTCCTCCTCCAGACCCTGCCCCGGACCAGTT
ACACTCTCTCCCAGCAAAGCAAATGGAAACGGCTCCCGTCTGTCTCCAGCCTGCTTGGTCCTCCATCACA
GGTTATCCTTTCTAATCTCACCCTGTTCTTTTGAAGAGCAATACATGTCGTCATGGCTGCGGGGAGACCC
CTCAGTACACCCACCTCTCTCTAGAAAGCAGTCCGATAGGCCCTCCACATTTCAAGTGTTACGAAAGTGC
TTACGGCCATTGTTGTTCGTTAATTTGTTTTGTGGTTTGTTTCTTAGCACTGTCGCTCAAGACCACAGTA
CACTTGGCCCTGGGTAAAATTTTGACAATCATAAGTCATTTCAAAAGAACAGACTTATTAAAGAAAAATC
AAACAGGACTGATTTAAAGACTTTCTCACTGCAGCTCCAAAGTAGTGGTTTGGTTTTGTTCTGTTCCAGG
GGGAGAGGGTATCTGCGTAGGGAAGACTCTCCCTGACCAGCCCGCTGAGTGGTGGGTAGCCGGTGCTCTG
CCTGGAAGCCCACCGCCCTGGCTAAGACGCCAGGAGCACAGCCACAGAGCATCCTCCTGACATCCAGTGC
TGTGCGATGCTGCAAAAGCAAAGCCTTGTGTTTGTCTTCAACACATTCGTGCTGAATTCTGTCTGAGAAT
GGTCTGTTCTTAGCCCCAGGTGT
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:GGAGATCTCCAGCTCACCAAGAGCC; Reverse Primer - name:unspecified, sequence:ACACCTGGGGCTAAGAACAGACC. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:NMRI
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:9169 same embryo
 EMAGE:9170 same embryo
 EurExpress:euxassay_017996 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS