Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:9187

Syt7 synaptotagmin VII ( MGI:1859545)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:9187 EMAGE:9187 EMAGE:9187 EMAGE:9187 EMAGE:9187
"Pseudo-wholemount" of euxassay_017972. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_017972_01 euxassay_017972_02 euxassay_017972_03 euxassay_017972_04
EMAGE:9187 EMAGE:9187 EMAGE:9187 EMAGE:9187 EMAGE:9187
euxassay_017972_05 euxassay_017972_06 euxassay_017972_07 euxassay_017972_08 euxassay_017972_09
EMAGE:9187 EMAGE:9187 EMAGE:9187 EMAGE:9187 EMAGE:9187
euxassay_017972_10 euxassay_017972_11 euxassay_017972_12 euxassay_017972_13 euxassay_017972_14
EMAGE:9187 EMAGE:9187 EMAGE:9187 EMAGE:9187 EMAGE:9187
euxassay_017972_15 euxassay_017972_16 euxassay_017972_17 euxassay_017972_18 euxassay_017972_19
EMAGE:9187 EMAGE:9187 EMAGE:9187 EMAGE:9187 EMAGE:9187
euxassay_017972_20 euxassay_017972_21 euxassay_017972_22 euxassay_017972_23 euxassay_017972_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:9187Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
9187_wholemount_strong.wlz
9187_wholemount_moderate.wlz
9187_wholemount_weak.wlz
9187_wholemount_possible.wlz
9187_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:9187_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T51099
Entity Detected:Syt7, synaptotagmin VII ( MGI:1859545)
Sequence:sense strand is shown

>T51099
TGCTGGTCTCTGCAATCATCACCGTCAGCCTTAGCGTCACTATCGTCCTCTGCGGCCTGTGCCACTGGTG
TCAGCGCAAACTGGGCAAACGCTACAAGAATTCCTTGGAGACGGTGGGCACGCCAGACTCGGGGCGTGGG
CGCGGTGAGAAGAAAGCCATCAAGTTGCCTGCAGGAGGGAAGGCTGTGAATACAGCCCCAGTGCCCGGCC
AGACGCCACACGATGAGTCTGACCGCAGAACGGAGACCCGTTCCTCTGTCTCGGACCTCGTCAACTCCCT
TACCAGCGAGATGCTCATGCTCTCCCCAGGTTCTGAGGAGGATGAGGCCCACGAGGGCTGCAGCCGAGAG
AACCTGGGCCGAATCCAGTTCAGTGTTGGCTACAACTTCCAAGAGTCCACACTCACCGTGAAGGTCATGA
AGGCCCAAGAGCTGCCAGCCAAGGACTTCAGCGGTACTAGTGACCCCTTTGTCAAGATCTACCTGCTACC
CGACAAGAAGCACAAACTGGAGACCAAGGTGAAGCGGAAGAATCTAAACCCGCACTGGAATGAGACCTTT
CTATTTGAAGGGTTTCCCTACGAGAAAGTGGTGCAGAGGGTCCTCTACCTCCAGGTCCTGGATTATGACC
GTTTCAGCCGCAATGACCCCATTGGGGAGGTGTCCATCCCTCTGAACAAGGTGGACCTGACCCAGATGCA
GACCTTCTGGAAGGATCTGAAGCCATGCAGCGATGGGAGTGGGAGCCGAGGGGAGCTGCTCTTGTCCCTC
TGCTACAACCCCTCTGCCAACTCCATCATCGTGAACATCATCAAAGCTCGAAACCTCAAAGCCATGGACA
TCGGGGGCACATCAGACCCCTATGTGAAGGTGTGGCTGATGTATAAAGACAAGCGGGTAGAGAAAAAGAA
GACTGTGACAAAGAAGAGGAACCTGAACCCCATCTTCAATGAGTCTTTCGCCTTCGACATACCCACGGAG
AAGCTGAGGGAGACCACGATCATCATCACTGTCATGGACAAAGACAAGCTCAGC
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:TGCTGGTCTCTGCAATCATC; Reverse Primer - name:unspecified, sequence:GCTGAGCTTGTCTTTGTCC. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:NMRI
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:9189 same embryo
 EMAGE:9190 same embryo
 EMAGE:9191 same embryo
 EMAGE:9188 same embryo
 EurExpress:euxassay_017972 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS