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EMAGE:9244

Hlf hepatic leukemia factor ( MGI:96108)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:9244 EMAGE:9244 EMAGE:9244 EMAGE:9244 EMAGE:9244
"Pseudo-wholemount" of euxassay_017993. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_017993_01 euxassay_017993_02 euxassay_017993_03 euxassay_017993_04
EMAGE:9244 EMAGE:9244 EMAGE:9244 EMAGE:9244 EMAGE:9244
euxassay_017993_05 euxassay_017993_06 euxassay_017993_07 euxassay_017993_08 euxassay_017993_09
EMAGE:9244 EMAGE:9244 EMAGE:9244 EMAGE:9244 EMAGE:9244
euxassay_017993_10 euxassay_017993_11 euxassay_017993_12 euxassay_017993_13 euxassay_017993_14
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euxassay_017993_15 euxassay_017993_16 euxassay_017993_17 euxassay_017993_18 euxassay_017993_19
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euxassay_017993_20 euxassay_017993_21 euxassay_017993_22 euxassay_017993_23 euxassay_017993_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:9244Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
9244_wholemount_strong.wlz
9244_wholemount_moderate.wlz
9244_wholemount_weak.wlz
9244_wholemount_possible.wlz
9244_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:9244_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T50523
Entity Detected:Hlf, hepatic leukemia factor ( MGI:96108)
Sequence:sense strand is shown

>T50523
AAGAACTGAAGCCACAGCCCATGATTAAGAAAGCTCGCAAAGTCTTCATTCCCGATGATTTGAAGGATGA
CAAGTACTGGGCGAGGCGCAGAAAGAACAACATGGCGGCCAAGCGCTCCCGTGATGCCCGGCGGCTGAAG
GAGAACCAGATCGCAATCCGGGCCTCATTCCTGGAGAAGGAGAACTCGGCCCTCCGCCAGGAGGTGGCTG
ATTTAAGGAAGGAGCTGGGCAAATGCAAGAACATACTTGCCAAGTACGAGGCCAGGCACGGGCCCCTGTA
AGATGGCATTTTGGTGGGCTGGCTTTTGAATAGATGGACAGCTTGTTTCCTGTCTGGTAGCCCCACACCC
AAACCAACCTTTCTGACATCAGCACTTTACCAGAGGCATAAACGCAACTGACTCATATTTTGGTGTGCAT
CTATGCGTATGTATGTATGTTTGTGTGTGTGTATATGTGCTTATGGTCCCATGTGTGGTCAGCGGTGTGC
ATGTGTGAGCGTGTATATGTGTGTATTCCTTCACACTTGTCGTTTAAAGATAGTCCTCTTGTTGTCTTTT
AGTTCCAAACAAGAAAGGTGCCATGTTTTTTATTCCACCCTGGAGACTCCCATGGGGTTTCCTCCCCTTC
CTTCTCCCTTCCTGCCCCTTTCTGCCTTGCTCTGTGTTCTAGCGATCTCACTTGGCCAGGGTCTGTGTTG
CTTCAGGAAGCAGGGCCCTGGATCTCAGTGATCAAGACCATAAGCTCTTGTTTCTGTTTCAGCCATGAAT
TACCATGCTGGAAAGGTGCATAGCATACCCCTAGCACTGCGCGCAGCTGAATGCCTTCATAGGTTGCCCC
ACTTCCCTTCCCTTTTTCCTCCCCACCCTTTCTCGTTTTTTCCTTTCAGTTTTGGTGACACTTGTCTTCA
AATTTAAAGTGCTGTTTAGATTTAGTAGAGTCCCATATTTACTTACTGCTACCTACTAAGTTTCCTTTTA
ATTCCACCAACCCCA
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:AAGAACTGAAGCCACAGC; Reverse Primer - name:unspecified, sequence:TGGGGTTGGTGGAATTAAAA. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:NMRI
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:9243 same embryo
 EMAGE:9240 same embryo
 EMAGE:9242 same embryo
 EMAGE:9241 same embryo
 EurExpress:euxassay_017993 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS