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EMAGE:9596

Acss1 acyl-CoA synthetase short-chain family member 1 ( MGI:1915988)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:9596 EMAGE:9596 EMAGE:9596 EMAGE:9596 EMAGE:9596
"Pseudo-wholemount" of euxassay_018560. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_018560_01 euxassay_018560_02 euxassay_018560_03 euxassay_018560_04
EMAGE:9596 EMAGE:9596 EMAGE:9596 EMAGE:9596 EMAGE:9596
euxassay_018560_05 euxassay_018560_06 euxassay_018560_07 euxassay_018560_08 euxassay_018560_09
EMAGE:9596 EMAGE:9596 EMAGE:9596 EMAGE:9596 EMAGE:9596
euxassay_018560_10 euxassay_018560_11 euxassay_018560_12 euxassay_018560_13 euxassay_018560_14
EMAGE:9596 EMAGE:9596 EMAGE:9596 EMAGE:9596 EMAGE:9596
euxassay_018560_15 euxassay_018560_16 euxassay_018560_17 euxassay_018560_18 euxassay_018560_19
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euxassay_018560_20 euxassay_018560_21 euxassay_018560_22 euxassay_018560_23 euxassay_018560_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:9596Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
9596_wholemount_strong.wlz
9596_wholemount_moderate.wlz
9596_wholemount_weak.wlz
9596_wholemount_possible.wlz
9596_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:9596_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T50052
Entity Detected:Acss1, acyl-CoA synthetase short-chain family member 1 ( MGI:1915988)
Sequence:sense strand is shown

>T50052
CTGGGAGACAGTGCAGAGGCTAAAGATCAACCAGTTCTATGGTGCCCCGACAGCTGTCCGGCTGCTGCTG
AAGTATGGGGATGCCTGGGTGAAAAAGTATGACCGCTCTTCCCTGCGCACACTGGGGTCAGTGGGAGAGC
CTATCAACCACGAAGCCTGGGAGTGGCTCCACAAAGTCGTGGGTGATGGCAGATGTACACTGGTGGACAC
TTGGTGGCAAACGGAAACTGGAGGCATCTGCATTGCACCACGGCCCTCGGAAGATGGGGCAGAGATCCTC
CCGGGCATGGCCATGAGGCCGTTTTTTGGCATCGTTCCTGTACTCATGGATGAGAAGGGCAATGTTTTGG
AGGGTGGAGATGTCTCTGGGGCCTTGTGTATTTCCCAAGCTTGGCCAGGCATGGCAAGGACCATCTATGG
TGACCACCAGAGGTTCGTAGATGCCTACTTCAGAGCGTACCCAGGTTATTACTTCACTGGAGACGGAGCT
CACCGGACAGAGGGTGGCTATTACCAGATCACGGGGCGCATGGATGATGTCATCAATATCAGTGGTCATC
GCCTGGGGACTGCAGAGATTGAGGATGCAATGGCTGACCATCCCGCTGTTCCAGAGACTGCTGTCATTGG
GTACCCTCATGATATCAAAGGAGAAGCTGCATTTGCCTTCATTGTGCTGAAAGATAACATCAGTGATGAG
AACATGGTAGTGAATGAACTCAAATTGTCGGTGGCCACCAAGATCGCCAAGTATGCTGTGCCTGACCAGA
TCCTGGTGGTGAAGCGTCTCCCCAAAACCAGATCTGGGAAAGTGATGAGGAGACTACTGAGGAAGATCAT
CACCAGCAGGGGACAGGATCTAGGGGACACCACTACCCTGGAGGACCCCAGCGTCATCACAGAAATCTTG
AGTGCCTTCCAGA
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:CTGGGAGACAGTGCAGAGGC; Reverse Primer - name:unspecified, sequence:TCTGGAAGGCACTCAAGATT. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:NMRI
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:9595 same embryo
 EMAGE:9593 same embryo
 EMAGE:9597 same embryo
 EMAGE:9594 same embryo
 EurExpress:euxassay_018560 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS