EMAGE mouse gene expression spatial database

EMAGE:9882

Zbed3 zinc finger, BED domain containing 3 ( MGI:1919364)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_008133. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_008133_01	euxassay_008133_02	euxassay_008133_03	euxassay_008133_04

euxassay_008133_05	euxassay_008133_06	euxassay_008133_07	euxassay_008133_08	euxassay_008133_09

euxassay_008133_10	euxassay_008133_11	euxassay_008133_12	euxassay_008133_13	euxassay_008133_14

euxassay_008133_15	euxassay_008133_16	euxassay_008133_17	euxassay_008133_18	euxassay_008133_19

euxassay_008133_20	euxassay_008133_21	euxassay_008133_22	euxassay_008133_23	euxassay_008133_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

wholemount mapping

Download individual expression domains:

Download all expression domains:

Find spatially similar wholemount expression patterns:

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T6
Entity Detected:	Zbed3, zinc finger, BED domain containing 3 ( MGI:1919364)
Sequence:	sense strand is shown >T6 TTTTTTTTTTTTTTGCAGATAAATAAAAGTTTATTAAAAAAAAAAAGGAGTGTTGCAAAACTACAAGTAT TTCATGAAATTAATCTGTCAGGGTTATATTTCACGTCGGTCATAGAAACATTTTTCCCAAATCAAATGCA GTGATTTGTCCTAGAATGTATGTGGTTTTTATAAAATATAATGGTCAGATTGCCCTTTCAAACGTCTCAT AAAAAAGGCATTTACGTTTAATCTACCTTAAAAAGACCCTACCTCAAAACAAAAGCCTTTAGAAAGGCAC AGTGCACCTCCAAAAGAAGGGGCTTCAGAAGGCAGGTCAGGGCTGGGGAAGCCATGTGTGGCTTCTGGGT GCTAGCTTAGCATGCGCAGGACATGAAACAAACATGGTGAGATGCAAAGTGGCAAGTGTCACGCGT
Notes:	The probe template was PCR amplified from IMAGE:778202 using vector specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:778202 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:9884 same embryo
	EMAGE:9883 same embryo
	EurExpress:euxassay_008133 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source