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EMAGE:1039

Lhx1 LIM homeobox protein 1 ( MGI:99783)
TS19 (10.5 dpc)
in situ hybridisation

Data Images
EMAGE:1039
Fig 2C Suda et al, 2001 [PMID:11493561] . Copyright: This image is from Development and is displayed with the permission of the Company of Biologists Ltd who owns the copyright.

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:1039Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
1039_wholemount_strong_3D_1.wlz
1039_wholemount_moderate_3D_1.wlz
1039_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:1039_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
midbrain
detected detected
regionalExpression in posterior pretectum and tegmentum
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:20735
Entity Detected:Lhx1, LIM homeobox protein 1 ( MGI:99783)
Notes:The probe used in this study by Suda et al, 2001 [PMID:11493561] is indicated as that described by Fujii et al, 1994 [PMID:7909459] ie "Clone 31 (1.5kb insert)" which is depicted in Fig 1A therein and spans the entire ORF as well as ~0.2kb 5' UTR and ~0.1kb 3' UTR but the exact end points are not reported.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Age:10.5 dpc
Theiler Stage:TS19
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
General Information
Authors:Suda et al, 2001 [PMID:11493561] Indexed by GXD, Spatially mapped by EMAGE
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ PMID:11493561] Suda Y, Hossain ZM, Kobayashi C, Hatano O, Yoshida M, Matsuo I, Aizawa S 2001 Emx2 directs the development of diencephalon in cooperation with Otx2. Development (128):2433-50
 [ doi:10.1002/aja.1001990108] [ PMID:7909459] Fujii T, Pichel JG, Taira M, Toyama R, Dawid IB, Westphal H 1994 Expression patterns of the murine LIM class homeobox gene lim1 in the developing brain and excretory system. Dev Dyn (199):73-83
Links:MGI:2148273 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI