EMAGE mouse gene expression spatial database

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EMAGE:10652

6530418L21Rik RIKEN cDNA 6530418L21 gene ( MGI:1923497)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_000863. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_000863_01	euxassay_000863_02	euxassay_000863_03	euxassay_000863_04

euxassay_000863_05	euxassay_000863_06	euxassay_000863_07	euxassay_000863_08	euxassay_000863_09

euxassay_000863_10	euxassay_000863_11	euxassay_000863_12	euxassay_000863_13	euxassay_000863_14

euxassay_000863_15	euxassay_000863_16	euxassay_000863_17	euxassay_000863_18	euxassay_000863_19

euxassay_000863_20	euxassay_000863_21	euxassay_000863_22	euxassay_000863_23	euxassay_000863_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

10652_wholemount_strong.wlz

10652_wholemount_moderate.wlz

10652_wholemount_weak.wlz

10652_wholemount_possible.wlz

10652_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:10652_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

diencephalon lateral wall mantle layer

moderate

regional

moderate expression: see section 13 weak expression: see section 10 11 12 16 17 18 19

diencephalon lateral wall ventricular layer

moderate

homogeneous

moderate expression: see section 13 15

telencephalon mantle layer

weak

single cell

weak expression: see section 02 03 04 05 06 07 08 09 12 13 14 15 16 17 18 19 21

medulla oblongata alar plate mantle layer

moderate

single cell

moderate expression: see section 13 14 15

medulla oblongata basal plate mantle layer

moderate

single cell

moderate expression: see section 08 09 10 11 12 14 15 16 17 18 19

cerebellum intraventricular portion marginal layer

moderate

regional

moderate expression: see section 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23

pons mantle layer

moderate

single cell

moderate expression: see section 07 09 10 11 12 14 15 16 17 18 19

midbrain mantle layer

moderate

single cell

moderate expression: see section 15

midbrain ventricular layer

moderate

regional

moderate expression: see section 13 weak expression: see section 14

ventral grey horn

moderate

regional

moderate expression: see section 13 14 15 weak expression: see section 12 16

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T2140
Entity Detected:	6530418L21Rik, RIKEN cDNA 6530418L21 gene ( MGI:1923497)
Sequence:	sense strand is shown >T2140 TTTCCTGCAGACCTGGTGGGTAACTGGCTANATNTACCAGAACTGGAAAAGGGCGGGGAAAAGGGTGAGA CTGGGGGATCCATTGAACCCAAAGGAGAAAAAGGCCAGTCCAGAGAGCTGGGTCGTAAGTTTGCCCTAAC CGCAAACATTTTTAGGAAGTTCTTGCGTAGCGTGCGGCCCGACAGAGACCGGCTGCTCAAGGAGAAGCCT GGCTGGATGACTCCCATGGTCTCTGAGTCACGAGCAGGACGCTCGAAGAAAGTCAAGAAGAGGAGCCTTT CTAAGGGCTCAGGACGGTTCCCTTTCTCAAGCACAGGAGAGCCCAGACATATTGAAACCCCCGCCACAAG CAGCCCCAAGGCCTTAGAACCCTCCTGTAGGGGCTTTGACATTAACACAGCTGTTTGGGTCTGAANAAAA AAAAAANNAAA
Notes:	The probe template was PCR amplified from IMAGE:874260 using vector specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:874260 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:10648 same embryo
	EMAGE:10649 same embryo
	EMAGE:10650 same embryo
	EMAGE:10651 same embryo
	EurExpress:euxassay_000863 same experiment
	MGI:4822788 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source