EMAGE mouse gene expression spatial database

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EMAGE:11539

Itgb1bp2 integrin beta 1 binding protein 2 ( MGI:1353420)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_006801. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_006801_01	euxassay_006801_02	euxassay_006801_03	euxassay_006801_04

euxassay_006801_05	euxassay_006801_06	euxassay_006801_07	euxassay_006801_08	euxassay_006801_09

euxassay_006801_10	euxassay_006801_11	euxassay_006801_12	euxassay_006801_13	euxassay_006801_14

euxassay_006801_15	euxassay_006801_16	euxassay_006801_17	euxassay_006801_18	euxassay_006801_19

euxassay_006801_20	euxassay_006801_21	euxassay_006801_22	euxassay_006801_23	euxassay_006801_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

11539_wholemount_strong.wlz

11539_wholemount_moderate.wlz

11539_wholemount_weak.wlz

11539_wholemount_possible.wlz

11539_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:11539_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

upper arm muscle

strong

regional

strong expression: see section 01 02

upper leg muscle

strong

regional

strong expression: see section 01 02 03 04 05 06 07 08 21 22 23 24

diaphragm

strong

regional

strong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 18 19 20 21 22 23 24

elbow rest of mesenchyme

strong

regional

strong expression: see section 01 02 03

forearm rest of mesenchyme

strong

regional

strong expression: see section 01 02 03

shoulder rest of mesenchyme

strong

regional

strong expression: see section 01 02 03

upper arm rest of mesenchyme

strong

regional

strong expression: see section 03

hand mesenchyme

strong

regional

strong expression: see section 02 03

tarsus rest of mesenchyme

strong

regional

strong expression: see section 06 07 08 21 22 23 24

hip rest of mesenchyme

strong

regional

strong expression: see section 01 02 03 04 05 06 07 08 21 22 23 24

knee rest of mesenchyme

strong

regional

strong expression: see section 01 02 03 04 05 06 07 08 21 22 23 24

lower leg rest of mesenchyme

strong

regional

strong expression: see section 01 02 03 04 05 06 07 08 21 22 23 24

vertebral axis musculature

strong

regional

strong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24

tongue muscle

strong

regional

strong expression: see section 12 13 14 15 16 17 18 19

tail paraxial mesenchyme

strong

regional

strong expression: see section 10 11 12 13 14 15 16 17 18 19 20

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T8245
Entity Detected:	Itgb1bp2, integrin beta 1 binding protein 2 ( MGI:1353420)
Sequence:	sense strand is shown >T8245 ACTCCTTGAAATACCCTTTGAGTGAGCTTCAGTGTCTCCATGTCTCTGCTCTGCTATAACAAAGGCTGTG GGCAACACTTTGACCCCAATACCAATCTCCCTGATTCCTGTCGCTATCACCCTGGGGTGCCAATCTTTCA TGATGCACTTAAGGGTTGGTCCTGCTGCCGAAAGCGAACTGTAGATTTCTCTGAGTTCTTAAACATCAAG GGCTGTACTGTGGGACTACACTGTGCAGAGAAGCTGCCTGAGGTCCCTCCTCAGCCTGAGGGCCCTGCCA CAAGTTCACTTCAGGAGCAAAAACCTCTAAATACAATTCCAAAGTCAGCAGAGACCTTGTTCCGAGAAAG GCCTAAGTCTGAGATGCCTCCCAAACTGCTACCACTTCTTATATCTCAAGCCCTGGGAGTGGCTTTGGAA CAGAAGGAACTAGACCAGGAACCGGGAGCAGGACTTGACAATAGTCTGATCTGGACTGGTTCCAGCTGCC AGAACCCAGGATGTGATGCTGTTTACCAAGGTCCTGAGAGTGATGCTACTCCGTGTACCTATCACCCAGG GGCACCTCGGTTTCATGAGGGGATGAAGTCTTGGAGCTGTTGTGGTATCCAGACTCTGGATTTTGGGGCA TTCCTGGCACAGCCAGGATGTAGAGTTGGTAGACATGATTGGGCAAAGCAGCTGCCAGCATCTTGCCGCC ATGATTGGCACCAGACAGACTCTGTAGTAGTGCTGACGGTCTATGGCCAGATTCCGCTTCCTGCATTCAA CTGGGTGAAGGCCAGTCAAACTGAGCTTCATGTCCACATTGTCTTTGATGGTAACCGTGTGTTCCAAGCA CAGATGAAGCTCTGGGGGGTCATAAACGTGGAGCAGAGCTCTGTCTCTTTGATGCCATCACGGGTTGAAA TCTCCCTGGTCAAGGCTGACCCAGGATCCTGGGCCCAGCTGGAGCACCCTGATTCACTAGCTGAGAAGGC TAGGGCAGGGGTTTTACTAGAGATGGATGAGGAAGAATCTGAGGATTCAGATGATGACCTGAGCTGGACA GAGGAGGAAGATGAAGAGGAGGAAGAAGCTATGGGGGAATAGTAACAGCAGACAGTTGAGTTTCTAGGTA GGGCCTCAGTGACCGCCTTAGAATCTCAGAGACCAGGATATGGTTGACCTTGTGGTGTCACTGGGCAGCA GGAAGCTAAAGGAGGAGAGAACAAAATGTGCAAATGTGCCTCTGCTCCCCTGAATAAACCTTCTATTCTA CAGTCTCAAAAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:1346742 using vector (pT7T3D-PacI) specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:1346742 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:11536 same embryo
	EMAGE:11540 same embryo
	EMAGE:11538 same embryo
	EMAGE:11535 same embryo
	EMAGE:11537 same embryo
	EurExpress:euxassay_006801 same experiment
	MGI:4825653 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source