EMAGE mouse gene expression spatial database

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EMAGE:11711

4930544M13Rik RIKEN cDNA 4930544M13 gene ( MGI:1922411)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_011159. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_011159_01	euxassay_011159_02	euxassay_011159_03	euxassay_011159_04

euxassay_011159_05	euxassay_011159_06	euxassay_011159_07	euxassay_011159_08	euxassay_011159_09

euxassay_011159_10	euxassay_011159_11	euxassay_011159_12	euxassay_011159_13	euxassay_011159_14

euxassay_011159_15	euxassay_011159_16	euxassay_011159_17	euxassay_011159_18	euxassay_011159_19

euxassay_011159_20	euxassay_011159_21	euxassay_011159_22	euxassay_011159_23	euxassay_011159_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

11711_wholemount_strong.wlz

11711_wholemount_moderate.wlz

11711_wholemount_weak.wlz

11711_wholemount_possible.wlz

11711_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:11711_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

telencephalon mantle layer

weak

regional

weak expression: see section 09 10 21 22 23 24

olfactory cortex marginal layer

moderate

regional

moderate expression: see section 17 18 19 20 weak expression: see section 12

pons mantle layer

weak

regional

weak expression: see section 09 10 17 18 19 20

tegmentum

weak

regional

weak expression: see section 09

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T37376
Entity Detected:	4930544M13Rik, RIKEN cDNA 4930544M13 gene ( MGI:1922411)
Sequence:	sense strand is shown >T37376 GTCTACTTGCTTTGGCCTTGATTCCCTTCCCTGTTGTTAGCCTTAGCTATTTATCCTTATCCCACAAGGA TGAAGTTAAGGGGGCATGGGAGACCTGAGGATTAGCGGTCTTCACCCTTTGTCCATGTGGTCCAGATGAG TATTGGTTTAGTTTGTTCCAGATCCTATAAGGCTTAGAACTCAGATTAACTATCAAGTCGTCCTGAGCAC CATTTTCAAGTGGCTTTACATGTGTGGCCACACTCATGCCTTTCCACAAAGACAGATTGCCGGCACAATC CAGTCTACAGCCCTACAGGCCTTCCCTGCTGGCTTTAGATCAGAAGCTGGCCGTTCCAGAGTATCTA
Notes:	The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 68312. Forward Primer - name:068312_F_cDNA_4930544M13Rik, sequence:GTCTACTTGCTTTGGCCTTGAT; Reverse Primer - name:068312_N_SP6_cDNA_4930544M13Rik, sequence:TAGATACTCTGGAACGGCCAGC. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:11709 same embryo
	EMAGE:11713 same embryo
	EMAGE:11710 same embryo
	EMAGE:11712 same embryo
	EurExpress:euxassay_011159 same experiment
	MGI:4822735 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source