EMAGE mouse gene expression spatial database

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EMAGE:11835

Abr active BCR-related gene ( MGI:107771)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_008421. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_008421_01	euxassay_008421_02	euxassay_008421_03	euxassay_008421_04

euxassay_008421_05	euxassay_008421_06	euxassay_008421_07	euxassay_008421_08	euxassay_008421_09

euxassay_008421_10	euxassay_008421_11	euxassay_008421_12	euxassay_008421_13	euxassay_008421_14

euxassay_008421_15	euxassay_008421_16	euxassay_008421_17	euxassay_008421_18	euxassay_008421_19

euxassay_008421_20	euxassay_008421_21	euxassay_008421_22

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

11835_wholemount_strong.wlz

11835_wholemount_moderate.wlz

11835_wholemount_weak.wlz

11835_wholemount_possible.wlz

11835_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:11835_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

rib

strong

regional

strong expression: see section 01 02 03 04 05 06 07 08 09 10 11 18 19 20 21 22

peritoneal component

moderate

regional

moderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22

pleura

strong

regional

strong expression: see section 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22

mesenchyme

moderate

regional

moderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22

vertebral axis musculature

moderate

regional

moderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22

thymus primordium

moderate

regional

moderate expression: see section 12 13 15 16

submandibular gland primordium

strong

regional

strong expression: see section 08 09 10 11 18 19

brain

strong

regional

strong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22

facial vii ganglion

strong

regional

strong expression: see section 05 06 07 08 19 20 21

glossopharyngeal ix ganglion

strong

regional

strong expression: see section 07

trigeminal v ganglion

strong

regional

strong expression: see section 04 05 06 07 08 09 10 18 19 20 21 22

vagus x ganglion

strong

regional

strong expression: see section 08 09 18

vestibulocochlear viii ganglion

strong

regional

strong expression: see section 06 07 08 09 18 19

trigeminal v nerve

strong

regional

strong expression: see section 11

spinal cord

strong

regional

strong expression: see section 10 11 12 13 14 15 16 17

cervico-thoracic ganglion

moderate

regional

moderate expression: see section 11

cervical ganglion

moderate

regional

moderate expression: see section 10 11

dorsal root ganglion

strong

regional

strong expression: see section 08 09 10 11 17

nasal cavity olfactory epithelium

strong

regional

strong expression: see section 09 10 11 12 13 14 16 17 18 19

naso-lacrimal duct

strong

regional

strong expression: see section 05 06 07 08 09 10 11 18 19

stomach

strong

regional

strong expression: see section 04 05 06 07 08 09 10 11 moderate expression: see section 02 03

midgut

strong

regional

strong expression: see section 08 09 10 11 14 15 16 17 18 19 20 moderate expression: see section 12 13

liver

moderate

spotted

moderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22

renal cortex

strong

regional

strong expression: see section 07 08 09 10 11 12 18 19 20 21

left lung

moderate

regional

moderate expression: see section 04 05 06 07 08 09 10 11 12

right lung

moderate

regional

moderate expression: see section 12 13 14 15 16 17 18 19 20 21 22

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T9279
Entity Detected:	Abr, active BCR-related gene ( MGI:107771)
Sequence:	sense strand is shown >T9279 TCGTCCTGCCTCCCGCTCCCACTGTTAATTTTTAGACGTGGAATTAGGCAGGAGGCAAAGGAAACACAGC CCCACATACGCAGCTGACATGCTATTAGGCGGGTGGAGACAGCAGAACCGCTCCTCCCCGACTCCCAGCA GCCTCTGACGGACTCAGCAGAGCCTGTGCCTGCTGGAGCTCCCACCCCCCTCCCCAAGCCTGGCTGTACA GCCCCTGCCCTGGCCCAGGGTGCATGGTGCAGCAGGGGCCATGGCAGCCGGGGGCCGCCGCCGGCGCCCA CTGCGCTACCAGTCCCTGGCAGCCCTGGTGGAAGACTCTCAGTGGCCTTTCTTGTTCCTTGTCTCAGACT TCAGCTACGGTGCGGAGGACTACGACGCAGAGGGGCATGAGGAGCAGAAGGGGCCCCCCGAGGGCTCGGA GACCATGCCGTACATCGACGAGTCACCCACCATGTCGCCCCAGCTCAGCGCCCGCAGCCAAGGTGGTGGG GACAGCGTCTCGCCCACCCCACCTGAGGGATTGGCACCTGGGGTGGAGGCAGGGAAGGGTCTGGAGATGA GGAAGCTAGTCCTCTCTGGGTTTCTGGCCAGTGAAGAGATCTACATTAACCAGCTGGAAGCTCTGTTACT GCCCATGAAACCCCTGAAGGCCACAGCCACCACCTCCCAGCCTGTGCTCACCATCCAACAGATTGAGACC ATCTTCTACAAGATCCAGGACATCTACGAGATCCACAAGGAGTTCTACGACAACCTCTGCCCCAAGGTGC AGCAGTGGGACAGCCAGGTCACCATGGGCCATCTTTTCCAGAAACTGGCCAGCCAGCTTGGCGTGTACAA AGCATTTGTGGATAACTATAAAGTCGCTCTGGAGACAGCCGAGAAGTGCAGCCAGTCCAACAACCAGTTC CAGAAGATCTCTGAGGAACTCAAAGTGAAAGGGCCCAAGGACTCTAAGGACAGCCATACATCAGTCACCA TGGAAGCTCTGCTGTACAAGCCAATTGACCGAGTCACCCGGAGCACCCTGGTCCTTCACGATCTGTTGAA GCACACACCCGTGGACCACCCGGACTACCCGCTGCTTCAGGATGCTCTCCGCATCTCCCAGAATTTCCTG TCTAGCATTAACGAGGACATTGATCCTCGCCGGACTGCAGTCACAACCCCCAAGGGAGAGACTCGGCAGC TGGTGAAGGACGGCTTCCTGGTGGAAATGTCTGAGAGCTCCCGGAAGCTGCGGCATGTCTTTCTCTTCAC AGATGTTCTGCTGTGTGCCAAGCTAAAGAAGACCTCAGCAGGAAAGCATCAGCAGTATGACTGTAAGTGG TACATCCCTCTGGCTGACTTAGTGTTCCCATCCCCTGAGGAGTCAGAGGCCAGTCCCCAGGTGCACCCCT TCCCAGACCACGAGCTCGAGGACATGAAAACGAAGATCTCTGCCCTCAAGAGTGAGATCCAGAAGGAGAA AGCCAACAAAGGACAGAGCCGAGCCATTGAGCGCCTCAAAAAGAAGATGTTTGAGAATGAGTTCTTACTG CTGCTCAATTCCCCAACGATCCCTTTCCGGATACACAATCGGAATGGAAAGAGTTACCTGTTTCTTCTGT CTTCTGACTATGAGAGGTCGGAGTGGAGAGAAGCGATTCAGAAGCTACAGAAGAAGGATCTCCAGGCCTT TGTCCTGAGCTCTGTGGAGCTCCAGGTGCTCACGGGATCCTGTTTCAAGCTTAGGACTGTGCACAACATT CCTGTCACCAGCAATAAAGATGATGATGAGTCTCCAGGACTGTACGGCTTCCTTCATGTCATCGTCCACT CTGCCAAGGGCTTTAAACAGTCAGCCAATCTTTACTGTACTCTGGAGGTGGATTCCTTTGGCTATTTTGT CAGCAAAGCCAAGACCAGGGTGTTTCGGGACACGACAGAGCCCAAGTGGGATGAGGAGTTTGAGATTGAG CTGGAGGGTTCACAGTCCCTGAGGATCCTGTGTTATGAGAAGTGCTACGACAAGACCAAGGTCAACAAAG ACAACAATGAGATTGTGGACAAGATCATGGGCAAGGGGCAGATCCAGCTGGATCCACAGACAGTAGAAAG CAAGAACTGGCATACGGACGTGATTGAAATGAATGGGATCAAAGTGGAATTCTCCATGAAATTTACCAGC CGTGACATGAGCCTGAAGAGGACCCCATCCAAAAAGCAGACAGGCGTCTTTGGAGTGAAGATCAGCGTGG TGACCAAGCGGGAGCGCTCCAAGGTGCCCTACATCGTCCGGCAATGCATAGAAGAGGTGGAGAAGAGGGG CATTGAGGAGGTTGGCATCTACAGGATATCAGGGGTGGCCACGGACATCCAGGCCCTGAAGGCTGTCTTT GATGCCAATAACAAGGACATCCTACTGATGCTGAGCGACATGGACATCAACGCCATCGCTGGGACCCTCA AGCTATACTTTCGGGAGCTGCCTGAGCCCCTCCTTACAGATAGACTTTATCCAGCCTTCATGGAGGGCAT TGCCCTGTCAGACCCTGCTGCCAAGGAGAACTGCATGATGCACCTACTCCGCTCCCTGCCTGACCCCAAC CTCATCACCTTCCTTTTCCTGCTGGAACACTTGAAAAGGGTTGCTGAGAAGGAGCCCATCAACAAGATGT CACTTCACAACCTTGCCACGGTGTTTGGCCCCACGTTACTGAGACCATCAGAAGTGGAGAGCAAAGCACA TCTCACATCAGCTGCAGACATCTGGTCCCATGATGTCATGGCCCAGGTCCAGGTCCTCCTCTACTACCTG CAGCATCCCCCCATTTCCTTCGCAGAACTGAAGCGGAACACACTGTACTTCTCCACAGACGTGTAGCCTG GGGTGGGCAGCTGTGGGGGCGGCCAGGGGCCAGCCCTCCAGCCGGGCCCCGACATAGACTTGAAAGACTG CAACAGAAACTCCCCAGCCTAGCACTCCAGAGTCCAAGGGAAGCCACCTTCCAAGAACTGGAACATGTGC ATCTTTTGTGCCACCTTGTACAAAGCCAGCTGACCAGCCCCCGCCTCCTCACCACACCCCAGCTCCTATC TTCTGTACCCGAGTGTGTCTGATGCTCCGTGCTGTCCAGGAATTGTTTTATGTATTATTGTCATTGCAGA AAAGGTAGTGGCCGAGCTGGTATGGGCACAGACAGATTGCTTTGTTCTTTCATTTCTCCCAGCACTCACT TTCTGCCTGAGTCCGGTCCAAGGACTTTTACTTTGCGCTTCGTAACTACTGCCAGCTTCTCCTCTCCTGG CCCTGCTCCCAGATTGCAGCCTCCCTGCAGTGTCTGCCCTTGCCACCTCCCAGCCTGCTGCATGCATGTG CAGCATGGGCTTTTGCTCCATCACCGCAAAGTTCTGCAGGGGCCCTGGGCAGTGCTGGCCTGTCTGACGT GCTGCCCTTGGCCTCCTTGCTCTCCACGTGTGGAAGCGCATCTGCTTTCCTTGCTGTCTGTGCAAATGCT GAACAAGGAGACAGACACACACTAATCCTCAGCACAGAGCTGGAAAGCTCATTTCTGGAATGTTCTATTT GAGAATTGCCATTTCTGGGGTTTGTCTGTTCTATCTCCTGCCTACCAGTCGGTATCTTCAGCTGTTTCTT CTATTGCTGGATTTTCTGTTCCTTTTCCCCAGTGTTCTGTTTTCTTTGAGTGTAATGACCCACAAGTGTC CTGCCATTAAGAGAGGTCAGGATTGCACCTGAAGGGTATGGTGGGCACCCAGGCTGTGAAGGAACAAGAT GAGTGGAGCGGCCAGCAGTGGCAAGTCAAGGGAAGCCAGTCTTCAGTGTAAGGACCCGCAGTGGCTATCC TAGTGTACATTCTCCTGGAGAGCAGCTTCTGTGGCTGAATCAGGTGTCCAGGTGAAGACAGGCCCTGTCC TGGAACCTGGAATCACACATACCTCGTGGTACTTTTGCCTTAGATTTTACACTCTCAACAGCCAAGCACT GCCACGGGGCAGCCACAATGCCATGCGTGCTCCAGAGCCTAGGAACAGCAGACAGAACCCAGTTGGAATG CTTCTACCCTGGCTTCTAAATTCAGGCCTGTGGGTAATCCCAAGTATACAGGAAATTGTGGGGTAGGCTG TCTCTCGTGAATTGAGTTCTGCTGGGGCTATAGAGCATCGGGTCGGCAGCTGTCATTCCCAGCTCTGTGA CCTACTGCTTGGTACTAAAAAGGAGTTTTCTTCCAAAAGCACTGTTTCCAGTCTGAGTAGGAGCTACCAG CCTGTGGCAATCAGCAGGGAAAGACAGGTGCTCCTGTCATAGGGGCTTGAGCTACCACAGCTACCACACA GCTTTCTGGATCTTCTATATGGCAGTTCATTCTTGGCCCTCAGGATTGGGGAGACCAGCTCTCATTGTGT GTGCTCAGGGCTAAGTCTAAACAAGGGTTTGCTGGCCCCCAAGCTGTTGTTTGTTAGGTGAGGTTAAGTA GGGCTCTTCTGGTCCTGTGCATACCTATTGCCTTTGACAGAACGGTACAGTTTGTTTATGCAGGAGGATG GCATGCCAACTTCCCAGCTGCCTACTAGCAGTTTAACAAGGAGCCTTGCTGTCTCAGACAGGTGAAAGAA AATGTCATGCATGTAAAGATCACATCTGCCACTACCTTGGCACTCAGGTGCTGGTATGTGCATTCTTGCT TCCAAAGGATTGACAGTAACAAATTCTCAAAGCTTGACTGGAGCTGGCTGCAGCTCAAAACAGTGCCTCC TGCCTCTTTAGAGCGGGGCTGCTCGGCAGCAGTGACTGCAGCCCCAGCTTGCTTAAGCAGTGTAACAGCA GGGAAGCGGGAGGAGCTGAGAACTATTAGAAGTTCCTATTATTTATAAATTCCACCCAAAGTGGACAGAG TCAGGTGCCAGACCTGATCTGAAGTGCACCAAGGAAGTATCTGGTGGTTCTCCTGAGATGGGGGCCTTGC AGCCCAGCACCCCCTCACTGCCAGCAGGGCACCAGGAGACAGGGTCCAGGAATCCAGGTATGCCTGTACT TGCTTGAGCAACGACTGAGGGCTGCCAGCTTTTGCTGACAAGGTAGGATGGGACCCCCAATAAGTGGGTA TGGATATATTTTTTTTTGTCTCTGTTCTGTTTAAACTTATGTAGATTATTATAAATTGATGTAAACCATG TGAGAGGGAAATGTTAATAAAAAAATTGCAAAGCCTCAACATTTGCACAAAACTCAAAAAAAAAAAAAAA AAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:6839300 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6839300 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:11834 same embryo
	EMAGE:11833 same embryo
	EMAGE:11836 same embryo
	EMAGE:11832 same embryo
	EurExpress:euxassay_008421 same experiment
	MGI:4822888 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source