EMAGE mouse gene expression spatial database

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EMAGE:12081

Slco1c1 solute carrier organic anion transporter family, member 1c1 ( MGI:1889679)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_007061. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_007061_01	euxassay_007061_02	euxassay_007061_03	euxassay_007061_04

euxassay_007061_05	euxassay_007061_06	euxassay_007061_07	euxassay_007061_08	euxassay_007061_09

euxassay_007061_10	euxassay_007061_11	euxassay_007061_12	euxassay_007061_13	euxassay_007061_14

euxassay_007061_15	euxassay_007061_16	euxassay_007061_17	euxassay_007061_18	euxassay_007061_19

euxassay_007061_20	euxassay_007061_21	euxassay_007061_22	euxassay_007061_23	euxassay_007061_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

12081_wholemount_strong.wlz

12081_wholemount_moderate.wlz

12081_wholemount_weak.wlz

12081_wholemount_possible.wlz

12081_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:12081_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

forebrain

strong

regional

strong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24

diencephalon meninges

moderate

regional

moderate expression: see section 05 06 07 08 09 10 11 12 13 14 15 16 17 18

lateral ventricle choroid plexus

strong

regional

strong expression: see section 04 05 06 07 08 09 11 13 14 15 16 17 18 19 moderate expression: see section 12

telencephalon meninges

strong

regional

strong expression: see section 01 02 moderate expression: see section 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24

olfactory cortex ventricular layer

moderate

regional

moderate expression: see section 01 02 03 04 08 09 13 14 weak expression: see section 05 06 07 15

telencephalon ventricular layer

moderate

regional

moderate expression: see section 17 18 19 20 21 22 weak expression: see section 16

hindbrain

strong

regional

strong expression: see section 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22

4th ventricle

strong

regional

strong expression: see section 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23

hindbrain meninges

moderate

regional

moderate expression: see section 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23

midbrain

strong

regional

strong expression: see section 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20

midbrain meninges

moderate

regional

moderate expression: see section 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20

spinal cord

strong

regional

strong expression: see section 12 13 14 15 16 17 18 19

spinal cord meninges

moderate

regional

moderate expression: see section 11 12 13 14 15 16 17 18 19

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T9398
Entity Detected:	Slco1c1, solute carrier organic anion transporter family, member 1c1 ( MGI:1889679)
Sequence:	sense strand is shown >T9398 GTGCCCTGGGAGCTGAGATGCAGGGCAGTGCCCTTGCCAGGGTGCCCAATTCTCTGCAGACTGCCAGAAA AAAAGAGGCCAACTGGAAAGACGAAAGAGAAAGACTGCTCAGGGGTGAGATCAGACCCTTGGTCTTTTCT TTCCTCTAATCTGCCCTGTCTGTGCCCACCAGCTCTCTTGACTTGCCAGAACTGTTCACAACTTCTGTGG GGTGCTGCCTCAGTTTCCTGTTTCAGACTGTGCTCTGTGATCCAGACCCTTGCGAACATTCTGAAAGGAA CTGGACAGCTTTGACTTCTACCTCCAGGCTGGGATAAGAAACATTCTCATGATGGACACCTCATCCAAAG AAAATGCCCATTTGTTCCACAAAAATTCAGCGCAACCTGCCGGAGGGCCATCCTTTACAGTCGGATATCC GTCCACAGAGGAAGCGCGGCCATGCTGTGGAAAACTCAAGGTGTTCTTGGGTGCCCTGTCGTTTGTTTAC TTTGCCAAAGCATTGGCAGAAGGCTATCTGAAGAGCACCGTGACTCAGATAGAGAGAAGGTTTGAGATCC CTTCCTCTCTGGTGGGAATAATTGATGGTAGTTTTGAAATCGGGAATCTCCTGGTCATAACGTTTGTTAG CTACTTTGGTGCCAAACTTCACAGGCCAAAAATAATTGGAGCAGGATGCCTGGTCATGGGCTTCGGAACT ATGCTCATTGCTGTACCCCAGTTCTTCATGGAGAAGTACAGCTATGAGAAATATGAGAGGTATTCCCCGT CCTCCAATGTTACTCCCAGCATCTCTCCGTGCTACCTGGAGTCCAGCAGTCCATCACCAAGCTCAATCCT GGGGAAATCACAGAACAAAATAAGTCACGAATGTGTAGGGGATTCCAGCTCCTCCATGTGGGTTTATGTC TTCCTGGGAAATCTTCTCCGAGGGTTAGGGGAGACGCCTATCCAACCCCTGGGCATCGCCTATCTGGATG ACTTTGCCAGTGAAGACAATGCTGCTTTCTACATCGGGTGTGTGCAGACAGTGGCAATTATAGGACCCAT TTTTGGCTTCCTTTTGGGCTCATTATGCGCAAAACTGTATGTTGATATTGGCTTTGTGAATCTAGACCAT ATAACAATCACCCCAAAGGATCCTCAGTGGGTCGGGGCCTGGTGGCTTGGTTACCTAATAGCTGGATTCC TAAGTCTCCTTGCAGCTGTTCCTTTCTGGTGCTTACCCAAGACTCTACCAAGATCCCAAAGTAGAGAGAA CTCTGGCTCCACATCTGAGAAATCCAAGTTCATAGATGACCCTATTCACTACCAAATGGCCCCTGGAGAC GATAAAATGAAAATCATGGAAATGGCAAAAGATTTTCTTCCATCATTGAAGACTCTTTTTAGAAATCCAG TATACATCTTATACTTGTGTGCAAGCACCGTTCAGTTCAATTCTCTATTTGGCATGGTCACATATAAACC AAAATACATTGAGCAGCAGTATGGGCAGTCTTCTTCCAAAGCCAACTTTGTCATTGGGCTCATCAACATT CCTGCAGTGGCCCTTGGAATATTCTCTGGGGGAATAGTTATGAAAAAATTCAGGCTGGGTATTTGTGAAG CTACAAAACTCTACTTGGGATCATCTGTCTTTGGCTACCTCCTCTTCCTCTCTCTGTTTGCACTGGGATG TGAAAATTCTAGTGTGGCCGGACTGACTGTCTCCTACCAAGGATTGCAACTCAAGATGTAAATGTTCAGA CTCAAAATGGGAGCCCATGTGTGGGGACAATGGGATTACCTATGTGTCGGCTTGTCTTGCTGGCTGTCAA TCCTCCAGCCGGAGTGGAAAGAACATTATATTTTCTAACTGCACTTGTGTGGGATTTGCAGCCCCCAAGT CAGGAAACTGGTCAGGCATGATGGGCAGGTGTCAGAAAGATAATGGATGTTCCCAAATGTTTCTTTATTT CCTTGTGATTTCAGTCATCACATCATATACATTATCTCTAGGTGGCATACCTGGATATATATTACTCTTG AGGTGCATTCAACCACAACTTAAGTCTTTTGCTCTGGGTATCTACACCTTAGCAGTAAGAGTTCTTGCAG GAATCCCAGCCCCTGTGTACTTTGGTGTTTTGATTGACACTTCATGCCTCAAATGGGGATTTAAGAAATG TGGAAGCAGAGGCTCCTGCAGGCTGTATGACTCCCACGCTTTCAGACACATATACCTGGGATTAACCACG CTCCTGGGCACGGTGTCTGTCTTCCTAAGCATGGCTGTACTTTTTGTTTTAAAGAAAAAATATGTCTCGA AACACAGCAGCTTAATAACCACAAGAGAAAAAATAGGGATGTCTTCAAGCATCAAAAAGGAGACATGCGC TGCAAGGGATCGTGGATTGCAGCCCAAGTACTGGCCAGGCAAGGAGACACGACTTTAAAAAAAAATCATG GAAACAAACAAATATGGGGTCATTTTATCCAATACATGTAAATGAATAAAAGCATAATCAAAAGGGCAAA AAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:30360663 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30360663 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	MGI:4828296 same experiment
	EurExpress:euxassay_007061 same experiment
	EMAGE:31844 same embryo
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source