EMAGE mouse gene expression spatial database

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EMAGE:12146

Nrip3 nuclear receptor interacting protein 3 ( MGI:1925843)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_008471. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_008471_01	euxassay_008471_02	euxassay_008471_03	euxassay_008471_04

euxassay_008471_05	euxassay_008471_06	euxassay_008471_07	euxassay_008471_08	euxassay_008471_09

euxassay_008471_10	euxassay_008471_11	euxassay_008471_12	euxassay_008471_13	euxassay_008471_14

euxassay_008471_15	euxassay_008471_16	euxassay_008471_17	euxassay_008471_18	euxassay_008471_19

euxassay_008471_20	euxassay_008471_21	euxassay_008471_22	euxassay_008471_23	euxassay_008471_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

12146_wholemount_strong.wlz

12146_wholemount_moderate.wlz

12146_wholemount_weak.wlz

12146_wholemount_possible.wlz

12146_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:12146_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

rib

strong

regional

strong expression: see section 07 08 09 10 11 12 13 14 16 17 18 19 20 21 moderate expression: see section 22 23

mesenchyme

strong

regional

strong expression: see section 15 16 17 weak expression: see section 01 02 03 04 05 06 07 08 09 11 12 13 14 18 19 20 21 22 23 24

submandibular gland primordium

strong

regional

strong expression: see section 09 10 11 moderate expression: see section 18 19 20 21

vibrissa

strong

regional

strong expression: see section 06 07 08 09 10 23 24

diencephalon lateral wall mantle layer

strong

regional

strong expression: see section 09 10 11 12 13 14 15 16 17 18 19 20 21

telencephalon mantle layer

strong

regional

strong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24

olfactory cortex mantle layer

strong

regional

strong expression: see section 08 09 10 11 12 13 14 15 18 19 20 21

medulla oblongata alar plate mantle layer

strong

regional

strong expression: see section 08 09 10 11 12 13 14 15 16 17 18 19 20

medulla oblongata basal plate mantle layer

strong

regional

strong expression: see section 08 09 10 11 12 13 14 15 16 17 18 19 20

rest of cerebellum mantle layer

strong

regional

strong expression: see section 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23

rest of cerebellum marginal layer

strong

regional

strong expression: see section 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23

pons mantle layer

strong

regional

strong expression: see section 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22

midbrain mantle layer

strong

regional

strong expression: see section 09 10 11 12 13 14 15 16 17 18 19 20 21

facial vii ganglion

strong

regional

strong expression: see section 05 06 08

trigeminal v ganglion

strong

regional

strong expression: see section 05 06 07 08 09 10 11 20 21 22 23 24

spinal cord mantle layer

strong

regional

strong expression: see section 10 11 12 13 14 15 16 17 18

dorsal root ganglion

strong

spotted

strong expression: see section 09 10 18 19

brachial plexus

strong

regional

strong expression: see section 09 10 11 13 17 18 19 20

lumbosacral plexus

strong

regional

strong expression: see section 18

nasal cavity olfactory epithelium

strong

regional

strong expression: see section 11 12 13 14 18 moderate expression: see section 10 19 20 21 22

tongue

strong

regional

strong expression: see section 12 13 14 15 16 17

ureter

strong

regional

strong expression: see section 11 12 13 17 18 19 20

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T9287
Entity Detected:	Nrip3, nuclear receptor interacting protein 3 ( MGI:1925843)
Sequence:	sense strand is shown >T9287 CCGGAGCTCTCCCAACTTCAGAGCACAGAGGTACAACTCTGAGAAGCCGAGCATGGCTCAGCTGTCAGTC ATCCCGGGATCGGCCGCGGCGTGGACAGGACTCCTCACCGAGGGCGGCCGCAAGGAGACAGACATGCGGG AAGCGGCGTCCCTGCGGCAGCAGCGCCGGATGAAGCAGGCGGTGCAGTTCATCCACAAGGACTCAGCCGA CCTGCTGCCCCTGGACGGCCTCAAAAAGCTGGGCTCGTCCAAGGACACGCAACCCCATAACATTCTGCAG AGGCGCCTCATGGAAACCAACCTGTCTAAGCTCCGGAGCACTCGTGTCCCTTGGGCCTCTAAGACCAACA AATTCAATCAGGCTAAGTCTGAAGGGCTGAAGAAGTGTGAAGATGAAGACATGATTTTAGTGTCTTGCCA GTGTGCTGGGAAGGACGTGAAAGCTTTGGTTGACACTGGCTGTCAATATAATCTCATCTCCTCAGCCTGT GTGGACAGATTGGGACTAAAGGACCATGTCAAATCTCACAAGCATGAAGGGGAAAAGCTTTCTCTACCAC GGCATCTCAAAGTAGTTGGCCAGATTGAGCACCTAATGATCACAGTGGGTTCTCTCCGTCTGGATTGCCA AGCAGCTGTGGTTGATGATAATGAAAAAAGCTTATCACTTGGTCTCCAGACTCTTAGATCCCTGAAGTGC ATCATAAACTTGGACAAGCACCGGCTGATTGTGGGGAAGACAGACAAAGAAGAAATCCCTTTTGTGGAGA CAGTTTCTGTGAATGACGACAACACTTCAGAAGCATAATTGCAGCCTGAAGCGTGTGCGCATGTGCACAC ACACACCAGGTTGACAGACTGAGAAAACTGGGTTTGAACTAAATACAATAGCAACTTGCTATGGACCAAG TCCTTCCCTCCAGTACATCCTGCAGGGGCTTCTTCCCGCTCAGACCTTTTTAGACTATAGTCTGTGCTTA GAGATCTTGTCTGGTTAATGGCTTAATGGTTAAACAGACATTGTTTTTTACTTCTTTGAATATTTAATTT ATAGACCTTTTTTGACACTGCCAGGTCTTATTTGTGGCCTATTTCTCTGCTTCTTCCAAGAATTTGCTTT TTATTAATCAATCCAGTGTAGGGGCTGCCAGGTTCTACTTCTCCATAGATAACACTTGCTTTTTGAAAAT ATTAAAATATACAGTAAATAGGAACTTTCTTTCAGCTGTTTCAAAGAGGTATAGAAACATGTCTTGACTT TAGAATCTCTTCTGAAGTAATTGATTTTTCCAGTGTGAACTTATCTGAAAGATGTTTCAGGGGGATCATC TGGTCCAGACATTTAATTTAAACACACAGACAGGTAAATTATCTAAATTCACATATTAAGTCATGGCAGA AGACAAGCAGAATCCAGACCTGATATCCAAACCAAGGCTCTTATGCTGCTTTCTTTGTTTTCCAGCCTTA AGAAGAAGGCAGGAAGGTTAAAGTGCAAGAAAGGAGGGGTAATGGATGTGGCTTTGTGGTGGCCTGCTTG TCTAATGTACACAAGGTCCTGGGTTCCATCACAGCACTAGAGATAGAGAGATGGCTTGTTTATTAAGAGT GCTTGCTTCATAAGCATGAAGACTGCCATTTGGATCCTAGTACCCAAACAAAAGCTGGGCATTGTCCCAC ACACACCTGAGACCCCAATGGAACTTTCTAGCTTCCAGTCTAACCAAAAGAGAGAGAGGAATAGACTGGA AGAGGGGGAGAATGGAGGGGGAGTGTCTCCAGAGTCCTTGCCTTAAAGGAACCAAGTGAAGTGTGGTAGA GGAATAGATGACATGACACCCACATGTTCCTCTGGCCTCTGTGAGTGTGCACAGGTGCACAGCTCCATGC ACTCATACAAATTCCTACACACACTCACAGACACACATGGACACACACCACAGGGAAGATGAGAGGGTGC AAAAACAGGCTACAAAGATGAAACAGTCTCTCAATGAACAAGAGAAGAAAGAAACCACAGATAGGAAGGC ATATTATTAGTTCCTGAGACACCACTGACAATGTAGTTGTCCCTGTGGGATATTGATTACCCCTAAGGAC CAGTCAGAATGTCTGTCTGTCTTGTTACATGTCACAAAGATTCAAGTAGCTGGAAGTAGAGATAGGGAAA GGAAAAATAAAAACCACAGTAGTCCAGAATAGAAGGAAGAGGCAGAGTATGCTGAGTGGGGAAGTCTACC TGGGAGACTTTCCTGAGACTGAAATGGGGAGTGAACCCTCCAGGCAGGGAAGTAAAGGCTGGCAAGCCCT CGGTACAGGGAAGGGAGAAAGGTAGCCGGCAGCATTAAGAACCATTAACAGCTGGATGTAGCATATGCCT TTAACACCAGCACCCAGAAGGCAGAGGCAGGGGCAGGCAGATATGAGACCAGCCTGGTCTACATAGTGAG TTCCAGGCCAGTCAGGGAGACGGTCTCAAAAGACAAAAAAATAAAAATAAAAATAAAAAAACAAACAAAG AAACCAGAATAACCTTTAAAACTGTCCAGTATTCCCTGATCTGACCCATCTCAGTGGACTGGGGAATCAC AGGGTTGCTTTTTAAGCTTTTTAAAATTTTTTTTTTATTTTTTATTTTGCTATTGTATCTTCTCAGGCAT AGAGGTGCCTATAGTGGAATCTTCCCTTCAGTTATAGAAATATTTGACAATTCAGAAAAAAAAGCTAACT GTAAGTAATCCTTCAAGATATTCCTAAGTCTACCCTTGGCTCATAGCAGTTCTCAAACTTCGAATCTTGT CTAGTGTCCCAGCCACCAGCCTGGCCCTGAGAGCTCCCTTGTGTGGGAGGAACCTGCACCTTCCTGAGGC TCCCTGCACTTTTGTTCATCACAGCAGCAGACTGCAGGCTCCTTCTAGTGTCTCTGGTTGGATTTCCTGG GGGCCAGTAAGGCCAGGACTTCTCAGGTTCTTGAAAGAGGCATTGATTTTGGCCTTTTTCAGTTGGGTAC TATATGGTACCAGGATGAATACATGGCCTTTAATGTTCCTTCTTGACTCTGACAAGCAGTCAGTTATTTT CTAATCTGGGAATAGAACCAATGGGTGAACTGGACTCCATGTCATAGCTCACTCAGTTCATTCTCACCAT CTGAATCTTCTAACCAAATTACTTGAGTCCCTAGGTATAATAGAGATACCCAAAATGCTTCAAGATAACT ATAGGAAGTCTTGGGGTTTAGTAATGCTTTTTTGTTTTGTTTATGAGACAGGATCTTATTATGTGGGCTA GGCTGGCCTGAAACTCAATATGTAGATGAGACAAGCCTCAAACTCATAGAAATCAGCCTGCCTGTGACTC GTCATTGATGCTTTTTAAATGCTGCCAAGTTAACTACTCTTACAGTTTCTGTCTCTTCAGTGTTCACAAA GGGACACTAGCTTTGCTTTTGGGGGCTAGCAAAGTAGGTCACTGGGTTTTTCCTAGTTAGAAAATGGTAG CATTTCTTAGGGTGTAATAAAGTGTCTGCTGTATCCTAGTTCTAAGTCCCTGGGAAGTAGCAGACCTGTC TCACTCCTTAACACACACCGCATCCAGGAAGCTGAAGATGCACATCCAGGGATTTCCATTTTAATTTGAG GAAGGGATGTCTTCTGACTTTCCTTTTTCCTTGCTCTGCACATACCCCTCTAGTATGGTTTTCTGTTCCT TAGCTCAGAGCATCTATAGACTGGATTACCTAGCTGCCCTTACTCTTGTGTAGTAGAAATACCTTTCAGG CTGGGGACTTGGAGGAGAGGAACTGGATTCCTCCCTCCTTCTGTTGCCAGGTCTTTCTGCATTAGCACTT TATCTGCTCAGTATTTCTGACTGTACTGGGCTTATTTGTGACACCGATATATCAATAAAGTGGACTTGTT CTCTGAAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:6839519 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6839519 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:12142 same embryo
	EMAGE:12144 same embryo
	EMAGE:12143 same embryo
	EMAGE:12145 same embryo
	EMAGE:12141 same embryo
	EurExpress:euxassay_008471 same experiment
	MGI:4826793 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source