EMAGE mouse gene expression spatial database

Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:12247

Zmiz2 zinc finger, MIZ-type containing 2 ( MGI:106374)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_007158. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_007158_01	euxassay_007158_02	euxassay_007158_03	euxassay_007158_04

euxassay_007158_05	euxassay_007158_06	euxassay_007158_07	euxassay_007158_08	euxassay_007158_09

euxassay_007158_10	euxassay_007158_11	euxassay_007158_12	euxassay_007158_13	euxassay_007158_14

euxassay_007158_15	euxassay_007158_16	euxassay_007158_17	euxassay_007158_18	euxassay_007158_19

euxassay_007158_20	euxassay_007158_21	euxassay_007158_22	euxassay_007158_23	euxassay_007158_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

12247_wholemount_strong.wlz

12247_wholemount_moderate.wlz

12247_wholemount_weak.wlz

12247_wholemount_possible.wlz

12247_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:12247_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

thymus primordium

weak

regional

weak expression: see section 11 12 13 14 15

submandibular gland primordium

weak

regional

weak expression: see section 07 08 09 10 16 17 18 19

thyroid gland

weak

regional

weak expression: see section 10 15

diencephalon

moderate

homogeneous

moderate expression: see section 07 08 09 10 11 12 13 14 15 16 17 18

vibrissa

weak

regional

weak expression: see section 06 07 08 21 22 23

telencephalon

moderate

homogeneous

moderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24

hindbrain

moderate

homogeneous

moderate expression: see section 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21

midbrain

moderate

homogeneous

moderate expression: see section 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18

facial vii ganglion

moderate

regional

moderate expression: see section 04 05 19

glossopharyngeal ix ganglion

moderate

regional

moderate expression: see section 06 07 17 18

trigeminal v ganglion

moderate

regional

moderate expression: see section 02 03 04 05 06 07 08 09 17 18 19 20 21 22

vagus x ganglion

moderate

regional

moderate expression: see section 08 17

vestibulocochlear viii ganglion

moderate

regional

moderate expression: see section 06 07 17 18

trigeminal v nerve

moderate

regional

moderate expression: see section 09 17

spinal cord

moderate

homogeneous

moderate expression: see section 08 09 10 11 12 13 14 15

cervico-thoracic ganglion

weak

regional

weak expression: see section 09 10 15

thoracic ganglion

weak

regional

weak expression: see section 12

dorsal root ganglion

strong

regional

strong expression: see section 06 07 08 15 16 moderate expression: see section 09 10 11 17

neural retina

weak

regional

weak expression: see section 01 02 03 23 24

nasal cavity olfactory epithelium

moderate

regional

moderate expression: see section 08 09 10 11 12 14 15 16 17 18 19

nasal cavity respiratory epithelium

moderate

regional

moderate expression: see section 13

esophagus

weak

regional

weak expression: see section 12

left lung

strong

regional

strong expression: see section 04 08 moderate expression: see section 05 06 07 09 10 11

right lung

strong

regional

strong expression: see section 20 moderate expression: see section 12 13 14 15 16 17 18 19 21 22 23

not examined

regional

not examined expression: see section 23

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T9485
Entity Detected:	Zmiz2, zinc finger, MIZ-type containing 2 ( MGI:106374)
Sequence:	sense strand is shown >T9485 GCCACCCTAAGGCCAACCTGGTGGATGGACTGCCGTTGTACATCTGCTGCCTGACTTTTCAGCATCTGCC TCAAAGAACACTCAAGCTCTGCTCCTTCTCAGCCGGAGCAGCAACTCCCGGATAAGCTCCAGCACATTGG GCCTGTAGGCTGCTCCATCACCAATGAACCCCATGAACCCCATGAAACCCGCCCTGCCCCCTGCACCACA CGGTGATGGTTCATTTGCATATGAGTCTGTGCCTTGGCAACAAAGTGCCACTCAGCCAGCTGGGTCACTG TCTGTGGTCACTACTGTGTGGGGAGTTGGCAACGCAACCCAGAGCCAGTGCCTGGGACAGCAGGCGTTTG CTGAAGGAGGTGCTAGCAAGAGCTACGTACAGCAAGGCGTGTATGGCCGAGGGAGCTACCCTGGGGGATC CAGCTTCACTACTGGGTATGCAGGAGGCCCTGCAGGCCTGGGGCTCCCCACACATGCAGCACGGCCCTCA ACTGACTTCACACAAGCAGCAGCTGCAGCTGCCATGGCTGCTGCTGCAGCCACCGCGACAGCCACAGCCA CAGCCACGGTGGCTGCCCTGCAGGAGAAGCAGAGCCAGGAGCTAAGTCAGTATGGAGCGATGGGGACTGG GCAGTCTTTTAACAGCCAGTTTCTGCAGCATGGAGGTCCTCGAGGACCCAGTGTGCCCCCTGGCATGAAC CCTTCAGGCATGGGAGGAATGATGGGCCCCTCTGGCCTTTCTTCAATGGCCATGACTCCTACCCGGGCAG CAGGCATGACACCCTTATATGCAGGACAGCGACTGCCTCAGCATGGGTACCCTGGGCCTCCGCAGGGGCA GCCACTGCCTCGACAGGGGATCAAGAGAGCCTACTCAGAGGTGTATCCTGGGCAGCAGTATCTGCAAGGA GGCCAGTATGCAGCCAACACTGCCCAGTATGCTCCTGGCCCTGGGCAGCCCCCTGGCCCTGCCTCCTCCT ATGCAGGACACAGACTACCCCTGCAGCAGGGAATGGCCCAGTCCCTGTCTGCGCCTGGCCCCACGGGACT GCATTACAAGCCCACAGAGCAGTTCAACGGGCAGGGCGCCAGCTTCAACGGGGGCAGCATCAGCTACAGC CAGCCTGGCTTGAGTGGGCCTTCCCGCTCCATCCCTGGTTACCCCAGCTCCCCACTGCCGGGGAATCCCA CACCACCCATGACGCCTAGCAGCAATGTTCCCTACATGTCCCCAAGCCAGGAAGTCAAGTCTCCTTTCCT GCCTGACCTCAAGCCAGGCCTCAGCTCCTTGCACCCGTCACCCTCCGCAAGTGTCCATTGTGATGAGCTG CGCCTGACCTTCCCAGTTCGAGATGGGGTGGTCCTGGAGCCCTTCCGCCTGCAGCACAACCTGGCTGTGA GCAACCATGTCTTCCAGCTCCGAGATTCTGTCTATAAGACCCTGATGCTGAGGCCTGACCTGGAGCTGCA GTTTAAGTGCTATCACCATGAGGACCGGCAGATGAACACCAACTGGCCAGCATCTGTGCAGGTCAGCGTC AATGCCACACCCCTCAGCATTGAGCGTGGAGACAACAAGACCTCGCACAAGCCCCTCTACCTGAAGCATG TGTGCCAGCCAGGTCGCAACACCATCCAGATCACTGTCACCGCCTGCTGCTGTTCCCACCTCTTCGTGCT GCAGCTGGTGCACCGTCCGTCTGTCCGTTCCGTGCTGCAGGGCCTCCTCAAGAAGCGCCTATTGCCAGCT GAACACTGCATCACCAAGATAAAGCGGAACTTCAGTAGCGGCACCATCCCTGGCACCCCTGGGCCCAATG GAGAGGATGGGGTGGAGCAGACGGCTATCAAGGTGTCCCTGAAGTGCCCCATCACCTTCCGCAGGATCCA GCTCCCAGCCCGTGGTCACGACTGTCGACATATACAGTGCTTTGACCTGGAGTCATACTTACAGCTCAAC TGTGAGCGGGGGACCTGGAGGTGTCCGGTATGCAACAAGACGGCATTGCTGGAGGGCCTGGAGGTGGATC AGTATATGCTGGGCATCCTGATTTATATTCAGAACTCAGACTACGAGGAGATCACCATTGACCCCACGTG CAGCTGGAAGCCAGTGCCTGTGAAGCCTGACCTACACATCAAGGAGGAGCCGGATGGGCCAGTGCTGAAG CGCTGCCGCACTGTGAGCCCTGCCCATGTGCTCATGCCCAGTGTGATGGAGATGATTGCAGCCCTGGGCC CTGGCGCTGCCCCTTTTGCCCCATTGCAGCCCCCTTCGGCCCCAACCCCCAGCGACTATCCCAGCCAGGG TTCCAACTTCATGGGGCCTGGAACTTTCCCAGAATCCTTCCCATCTGCTACACCCACCACCCCAAACCTT GCTGAGTTCACCCAGGGGCCACCCCCAATCTCCTACCAGTCTGACATTCCCAGCAGCCTCCTGACTCCAG ACAAGTCTACTCCTTGCCTCCCAGGCCAGATGGCACCAGCAGGCCACCTGGACCCAGCCCATAATCCTGG ACCACCAGGACTGCACACTCCCAACCTCGGGCCCACCCCAGGCACTCAGCTACACCATCCAAACCCTTCC CCTGCATCCCGGCAGCCCCTGGGCCAACCAAACACAGGACCCATCAGCGAACTGGCTTTCAATCCTGCCT CAGGCATGATGGGGCCTCCCAGCATGACTGGGGCAGGGGAGGCCTCAGAACCAGCTTTGGACCTGCTCCC AGAACTGACCAATCCTGATGAACTGCTCTCCTACCTGGGCCCACCTGACCTCCCCACAAACAGCAGTGAT GATCTGCTCTCACTCTTCGAGAACAACTGATCCTGTGGTGACCCCTGGCCTGGCGAAGACACACTCAAAG ATGCCACCACAGCCTTCCCTTCTCACCCAGCCCCACAGGCTGCCTGCTGGTTCTCCCTGAACTCCCAATG CACACACCCTGAGCTGGGGCCTGCCACTGCCAGCCCTGATGAACTGGAAGCAGCCCTGCGCTCCATGGGG CCCCAGGCCAGTGGGCCTCACAGCCTCCCTCCATCAAGCTCACTGCTCCAGAATGGTTCTTGTGAGGTGC CTGCAGGCCCCGTCAGCCCCACGTGCACAGCCCTCTGCCCCAGACTCATGGCCTTGCACTTGTCCTTCCA CCCTGCCTGCTCCTACCCAGCCTGCATCTTGTCCAGCACTGATCCTTCTGTTTCTGTTCCTCCTCAGCAG AGCTGGCTGCTGAGGCTGGCTCTGTACCCTTGGTCTGCAGCTCCAGTGCCTGAGCCTGGCAGCCTCAGAA CCATACAGAGCACCAGCCTTAGGGGGCCTGGCGCTCCCACCCAGCTGAATCTGGTTTAGGGGTTCCTCCC TCCACCCTGAGCTCCAGGTGGAGGCTGGGGTGGGAGCAATAAAGCACAACAATGTACATAGTGTAGAAAT GCCAACAGCTGGGAAAGGGAGGGACCGCTATTTCAGTCAGCATGTTCCTCTGGACTGGCCTGCGCCTTCC ATGTGGTGTCTGCCCCTTACTGAGCACAGACAGCTCAGGGGAGGTTCAACTCCTCTAGGGGTGGGCTTTC AGGCTCAGCTCTATGTAAATTCTCCAGTGAGCTGCTCCCCCAAGTTTCTCTTTTCTGTGAAAGTGAAGAA TTAGTACAGCTGTGTTTTTTAAACCACCTCATTTCCACCCTGCGGCCCACACCCAGGTGGGGGAGGCCAT TGCATCTGCTGGCAAAGCGCCTGGGCCTGCAAGCAGGGTGCTGGCCTGTTGTGTCTCCTGTCTGTGCAAT CTATTAAAGGACTCCCTCTTGGTGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:30354393 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30354393 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:12246 same embryo
	EMAGE:12248 same embryo
	EurExpress:euxassay_007158 same experiment
	MGI:4829359 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source