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EMAGE:13075

Slc5a5 solute carrier family 5 (sodium iodide symporter), member 5 ( MGI:2149330)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:13075 EMAGE:13075 EMAGE:13075 EMAGE:13075 EMAGE:13075
"Pseudo-wholemount" of euxassay_019729. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_019729_01 euxassay_019729_02 euxassay_019729_03 euxassay_019729_04
EMAGE:13075 EMAGE:13075 EMAGE:13075 EMAGE:13075 EMAGE:13075
euxassay_019729_05 euxassay_019729_06 euxassay_019729_07 euxassay_019729_08 euxassay_019729_09
EMAGE:13075 EMAGE:13075 EMAGE:13075 EMAGE:13075 EMAGE:13075
euxassay_019729_10 euxassay_019729_11 euxassay_019729_12 euxassay_019729_13 euxassay_019729_14
EMAGE:13075 EMAGE:13075 EMAGE:13075 EMAGE:13075 EMAGE:13075
euxassay_019729_15 euxassay_019729_16 euxassay_019729_17 euxassay_019729_18 euxassay_019729_19
EMAGE:13075 EMAGE:13075 EMAGE:13075 EMAGE:13075 EMAGE:13075
euxassay_019729_20 euxassay_019729_21 euxassay_019729_22 euxassay_019729_23 euxassay_019729_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:13075Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
13075_wholemount_strong.wlz
13075_wholemount_moderate.wlz
13075_wholemount_weak.wlz
13075_wholemount_possible.wlz
13075_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:13075_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
stomach
moderate moderate
regionalmoderate expression: see section 09 10
axial skeleton tail region
moderate moderate
regionalmoderate expression: see section 15 16
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T56052
Entity Detected:Slc5a5, solute carrier family 5 (sodium iodide symporter), member 5 ( MGI:2149330)
Sequence:sense strand is shown

>T56052
GTGATGGGTGTCATCAGTGGGCCTCTCCTTGGCGCTTTCACCCTCGGGATGCTGCTCCCAGCCTGCAACA
CGCCAGGCGTCCTCTCCGGGCTGACAGCAGGCTTAGCTGTATCCCTGTGGGTGGCCGTGGGGGCCACACT
GTACCCGCCTGGAGAGCAGACCATGGGGGTGCTGCCCACCTCGGCTGCGGGATGCACCAATGCCTCGGTC
CTCCCGAGCCCACCCGGAGCTGCCAACACTTCCAGAGGGATCCCCAGTTCTGGAATGGACTCGGGCCGCC
CAGCCTTTGCCGACACCTTTTATGCTGTCTCATATCTCTACTACGGGGCTCTGGGCACTTTGACCACTAT
GCTTTGTGGTGCTCTCATCAGCTACCTAACTGGCCCCACCAAGCGCAGCTCCCTGGGCCCTGGATTACTG
TGGTGGGACCTCGCTCGGCAGACAGCATCTGTGGCCCCAAAGGAGGACACCACCACCCTGGAGGACAGCC
TGGTTAAGGGACCGGAAGACATCCCTGCTGCGACCAAGAAGCCCCCTGGCTTCAGGCCAGAAGCCGAGAC
CCACCCCCTGTATCTGGGGCACGATGTTGAGACCAACCTCTGAGGGCGAGGCCCGAGAAAGCCAATCACA
GCCTCGGGCCAGCAGCCTCCTCTCTGAATGGTTGGACCGTCACCTGTACAGAAGCTTGGCTGATAGAGGC
CCTGCCCGCCCTGAAGTCCCTGTGTCCCACCTGCGCCCCCCAAAAGAGGGTTGGTTCTCTATCCACCAAG
GAAAACATCTGGAACCGCAGTGACCTTGTAGATTGCAGTAGGCAACTGAGAACACTCAGCTTCTCCAGAC
GGTGAGGTTTTCCCATTTAACAAGCAGAGAAGCTGAGGGCGGTCACCCCAACGCTGGGAAGGTAGAGGCA
AGAAATTCAGGAGGTCAAGATCATCCGCAGCTACA
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:GTGATGGGTGTCATCAGTGG; Reverse Primer - name:unspecified, sequence:TGTAGCTGCGGATGATCTTG. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:MGI:4828254 same experiment
 EurExpress:euxassay_019729 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS