Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:13641

Ncoa6 nuclear receptor coactivator 6 ( MGI:1929915)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:13641 EMAGE:13641 EMAGE:13641 EMAGE:13641 EMAGE:13641
"Pseudo-wholemount" of euxassay_019521. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_019521_01 euxassay_019521_02 euxassay_019521_03 euxassay_019521_04
EMAGE:13641 EMAGE:13641 EMAGE:13641 EMAGE:13641 EMAGE:13641
euxassay_019521_05 euxassay_019521_06 euxassay_019521_07 euxassay_019521_08 euxassay_019521_09
EMAGE:13641 EMAGE:13641 EMAGE:13641 EMAGE:13641 EMAGE:13641
euxassay_019521_10 euxassay_019521_11 euxassay_019521_12 euxassay_019521_13 euxassay_019521_14
EMAGE:13641 EMAGE:13641 EMAGE:13641 EMAGE:13641 EMAGE:13641
euxassay_019521_15 euxassay_019521_16 euxassay_019521_17 euxassay_019521_18 euxassay_019521_19
EMAGE:13641 EMAGE:13641 EMAGE:13641 EMAGE:13641 EMAGE:13641
euxassay_019521_20 euxassay_019521_21 euxassay_019521_22 euxassay_019521_23 euxassay_019521_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:13641Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
13641_wholemount_strong.wlz
13641_wholemount_moderate.wlz
13641_wholemount_weak.wlz
13641_wholemount_possible.wlz
13641_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:13641_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
submandibular gland primordium
moderate moderate
regionalmoderate expression: see section 09 10 11 weak expression: see section 08 18 19 20 21
vibrissa
moderate moderate
regionalmoderate expression: see section 09 21 weak expression: see section 07 08 22 23
facial vii ganglion
moderate moderate
regionalmoderate expression: see section 05 21 22 23 weak expression: see section 06
glossopharyngeal ix ganglion
moderate moderate
regionalmoderate expression: see section 09 weak expression: see section 08 20
trigeminal v ganglion
moderate moderate
regionalmoderate expression: see section 05 09 10 19 21 22 23 weak expression: see section 04 06 07 08 20
vagus x ganglion
moderate moderate
regionalmoderate expression: see section 10 19
dorsal root ganglion
moderate moderate
regionalmoderate expression: see section 09 11 13 18 19 weak expression: see section 10 12 20
neural retina
weak weak
regionalweak expression: see section 01 02 03 04 24
nasal cavity olfactory epithelium
moderate moderate
regionalmoderate expression: see section 17 weak expression: see section 09 10 11 12 13 15 16 18 19 20
vomeronasal organ
weak weak
regionalweak expression: see section 13
lower jaw incisor
weak weak
regionalweak expression: see section 12 13 16 17
upper jaw incisor
weak weak
regionalweak expression: see section 12 13 16 17
metanephros
weak weak
regionalweak expression: see section 09 10 11 19 20 21
lung
moderate moderate
regionalmoderate expression: see section 21 22 23 weak expression: see section 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 24
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T55118
Entity Detected:Ncoa6, nuclear receptor coactivator 6 ( MGI:1929915)
Sequence:sense strand is shown

>T55118
CCATTGACAACCAACAGTGGCCTGATGCCTCCCTCTGTCGCAGTTGTTGGACCTTTACACATACCTCAGA
ACATAAAATTTTCTTCAGCTCCTGTAACACCTAATGTCCCCTCCAGTAGTCCTGCTCCAAATATACAGAC
AGGTCGGCCATTGGTCCTTAGCTCACGAGCCACTCCTGTTCAGCTGCCTTCCCCTCCTTGTACATCCTCT
CCAGTTGTCGCTCCTAATCCTTCTGTCCAGCAAGTAAAAGAATTAAATCCAGATGAGGCTAGTCCTCAGA
CGAACACCTCAGCAGACCAGAGCACTCTGCCTCCTTCACAGCCAACCACAGTAGTTTCTCCCCTTTTGAC
CAATAGTCCAGGCTCCTCTGCCAATCGTCGAAGCCCAGTCTCATCCAGTAAGGGCAAAGGAAAAGTGGAC
AAAATTGGCCAGATTTTGCTGACCAAGGCTTGTAAGAAAGTTACAGGCTCTCTGGAGAAAGGGGAAGAAC
AATATGGTGCAGATGGAGAGACTGAAGGCCCAGGGCTAGAGATCACAACTCCTGGGCTAATGGGAACAGA
GCAGTGCTCCACAGAGCTGGACAGTAAAACCCCAACACCCTCAGCACCCACTCTACTAAAAATGACCTCT
AGCCCCATGGGCCCAAGCTCCACCTCAACAGGACCCATCTTACCTGGCGGTGCTCTTCCCACCAGTGTAC
GCTCAATAGTAACCACATTGGTACCCTCTGAGCTCATCTCCACAGCGCCAACCACAAAAGGCAATCATGG
TGGCGTAACATCTGAGCCACTTGCAGGTGGCCTAGTGGAGGAGAAGGTGGGATCCCATCCAGAGCTTCTA
CCCAGCATAGCCCCTTCACAGAATTTAGCCCCAAAGGAAACTCCAGCCACAGCACTGCAAGGGTCTGTTG
CTAGACCAGAACTTGAGGCAAATGCTGCCATAGCCTCTGGACAAAGCTGTGAGCCAAAAGAGATAGTTGA
GAAGTCCAAAACCCTGACGAGCCGAAGAAACTC
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:CCATTGACAACCAACAGTGG; Reverse Primer - name:unspecified, sequence:GAGTTTCTTCGGCTCGTCAG. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:13639 same embryo
 EMAGE:13640 same embryo
 EMAGE:13637 same embryo
 EMAGE:13638 same embryo
 EurExpress:euxassay_019521 same experiment
 MGI:4826624 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS