EMAGE mouse gene expression spatial database

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EMAGE:13722

Akna AT-hook transcription factor ( MGI:2140340)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_019530. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_019530_01	euxassay_019530_02	euxassay_019530_03	euxassay_019530_04

euxassay_019530_05	euxassay_019530_06	euxassay_019530_07	euxassay_019530_08	euxassay_019530_09

euxassay_019530_10	euxassay_019530_11	euxassay_019530_12	euxassay_019530_13	euxassay_019530_14

euxassay_019530_15	euxassay_019530_16	euxassay_019530_17	euxassay_019530_18	euxassay_019530_19

euxassay_019530_20	euxassay_019530_21	euxassay_019530_22	euxassay_019530_23

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

13722_wholemount_strong.wlz

13722_wholemount_moderate.wlz

13722_wholemount_weak.wlz

13722_wholemount_possible.wlz

13722_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:13722_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

thymus primordium

moderate

regional

moderate expression: see section 13 14 15 17 weak expression: see section 16

hypothalamus ventricular layer

weak

regional

weak expression: see section 12 13 14 15

diencephalon lateral wall ventricular layer

weak

regional

weak expression: see section 12 13 14 15

olfactory cortex ventricular layer

moderate

homogeneous

moderate expression: see section 15 16 weak expression: see section 09 10 11 17

telencephalon ventricular layer

moderate

homogeneous

moderate expression: see section 07 15 16 weak expression: see section 03 04 05 06 08 09 10 11 17 18 19 20 21 22 23

rest of cerebellum marginal layer

moderate

regional

moderate expression: see section 07 08 09 10 11 13 14 17 18 19 20 21 22 weak expression: see section 12 16 23

midbrain ventricular layer

weak

regional

weak expression: see section 11 12 13 14 15 16 17 18 19 20

neural retina

weak

regional

weak expression: see section 01 02 03 23

nasal cavity olfactory epithelium

weak

regional

weak expression: see section 09 10 11 14 15 16 17

vomeronasal organ

weak

regional

weak expression: see section 14

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T55003
Entity Detected:	Akna, AT-hook transcription factor ( MGI:2140340)
Sequence:	sense strand is shown >T55003 TGAGGAAAGCCATAGGGATGCTACCCAGGAGGATGAGGAACAGATGGGACCTATGAAGTCACCAGACTTC CGGCCATCCATGGCCAGAGATACGTACACACCAGTCCTGGATACAGCTGAAGTGGCTCAACGGGGCACCA AAGCCATGGTGTCACATCAGAGCAGTCTGACCAGCCTGGAAGAGAGCAGGCCCTCAGAGCTCCTTCCTCG AAAAGCCCTGCTTCGGGCTGGTGGGCCCCACACTGAGGAGCCCTGGATGGTGTCACCAGAGACAGACAGT GGCTTCGTGGGCTCAGAAACCAGTATAGTGTCACCCTTCACCCAGACCCCAGAGCACCGGCTCTCCCATG TCAGCACTTCAGGACCATCAGCTCAACACCTCACTGCCTCTGTGCCTGGTGATAGAACCTCCCATCCCAA GGCCAGGGGTCTCATGGTTCCCAGAAGAGCCACTGAGACTGGCATACCCAGAAGCCGAACCCAGCAGCAT TTCTCCAGCCTGAGCTCTCCCGGGAGAGGGGCACAGAGCTGCCACCTAGAGGAGACATCAGTGGCTAAAA TAGCGGTTCCCAGGTCTGAGTTCAAGAGACAGAAGCAGATTTCCAAACAGCTCCTTCCCAGTGGAAGAAC CAGCCCCGACTCTGCCCCAGCTCCCACAGCTGCCTCCACGCCCCATGGATCAGCAGAGAGCACTGCCAAC CTCCTCCTCAACAGGACAGAGCGCGACCAGGCCATCAAGGATCTGCAGGCGGAGGTGTCACGGCTCCGCC TTCAACTGGAGGACAGCCTGCACCGGCCACACCCAGACGGCCCAGCCTGTGTAGCTTCTGCTTTCAACCA CTCCACCCAGACCCAGGAAAAGCTGGGTTCCTCACCCTCCTGGGGCCCCCACTATGGCAGTAAATCCACA GAGAGGCTGTCTAGGGAGCCTAATGGTGTAGAGCCAGCTGAGCCAATGGGAAGACGTCGAGCCAGGTCCT CTTCGGTGCCTCGGGATGTACCCAGACTGTACCTAAGTTCTGAATCGGAGTCGCCTGCCCCTCGGCTCTC ATCTGAGAAGAGCAGGACCTTTGAGGAGCACCCCGAGGCTGCACAGTGGGGGACAAGACCACAGAGCAGC TCGAAGCGGAGGGAAAGAGTTTCCTTCCGGGGTCAATACACAGGCCAGGAGTACCACATTCTATCCCCAA AGGCCATCCTGAAGGACAGTGGCACACCGTCCTGTCCCCACTGCCATCCCATTAGGACCCAGGACACAGG CAGTGCTGTCTCTAGAGACACCACACGGGGCTCATCTGCCGCTGACACCCTCCGCTGTGCCCTGTGTGGT GAAGTCAAGTCCTCTGCAGAAGCAGATGGCTCCAGCTCAGGTCCCTCTGAGAAGAACACCCCCAAAAAGC CTTCCACCCCCATCCTCAAACGGAAGAACAGGCAGACGGGCTCGCCAGTACGAATGGCCCCTGGACTCTG GTACCTGGCTGCTGCGCCCCCAGCCCCAGCCCCACCGGCTTTGGCCTACATCTCCTCAGCTCCCATTATG CCTTATCTACCACCCACTGTGTACTATGCAGCCCCAGCACCTACCTCAGCCCAGACAGCTT
Notes:	The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:TGAGGAAAGCCATAGGGATG; Reverse Primer - name:unspecified, sequence:AAGCTGTCTGGGCTGAGGTA. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:13721 same embryo
	EurExpress:euxassay_019530 same experiment
	MGI:4823066 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source