EMAGE mouse gene expression spatial database

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EMAGE:17953

Tjp1 tight junction protein 1 ( MGI:98759)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_011726. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_011726_01	euxassay_011726_02	euxassay_011726_03	euxassay_011726_04

euxassay_011726_05	euxassay_011726_06	euxassay_011726_07	euxassay_011726_08	euxassay_011726_09

euxassay_011726_10	euxassay_011726_11	euxassay_011726_12	euxassay_011726_13	euxassay_011726_14

euxassay_011726_15	euxassay_011726_16	euxassay_011726_17	euxassay_011726_18	euxassay_011726_19

euxassay_011726_20	euxassay_011726_21	euxassay_011726_22	euxassay_011726_23	euxassay_011726_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

17953_wholemount_strong.wlz

17953_wholemount_moderate.wlz

17953_wholemount_weak.wlz

17953_wholemount_possible.wlz

17953_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:17953_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

brain

moderate

single cell

moderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24

diencephalon meninges

moderate

regional

moderate expression: see section 06 07 08 09 10 11 12 13 14 15 16 17 18

telencephalon meninges

moderate

regional

moderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24

medulla oblongata floor plate

moderate

regional

moderate expression: see section 09 10

hindbrain meninges

moderate

regional

moderate expression: see section 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20

metencephalon floor plate

moderate

regional

moderate expression: see section 11

midbrain meninges

moderate

regional

moderate expression: see section 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18

spinal cord

moderate

single cell

moderate expression: see section 06 07 08 09 10 11 12

spinal cord meninges

moderate

regional

moderate expression: see section 07 08 09 10 11 12

metanephros

moderate

regional

moderate expression: see section 03 04 weak expression: see section 12 13 14 15

left lung

moderate

regional

moderate expression: see section 01 02 03 04 05 06 07 08

right lung

moderate

regional

moderate expression: see section 08 09 10 11 12 13 14 15 17 18 19 20

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T37138
Entity Detected:	Tjp1, tight junction protein 1 ( MGI:98759)
Sequence:	sense strand is shown >T37138 TGTGTTTCTGTCCTGATTGACCACTTTTAATTCTTAGTGTATAGGAACTGGACTAAGCAATGTGAACGTG GATTGAACTTACTAAATCTAAATGGAACCACTCTAATGAGTATTATATTTTCTTAGAATTTATACTGCAA TTGGTAGTATTAAGCATTTGTTGGAACTGATGAAGGTTAGCGAGCATGCCCCTGAGCCACGGTCAGAAAG CATGCTACAAGCTATGTGTTATTGAGTGAAGAACTGTCAGGCATTGGCTAGAGGTTCAAAGATATTTTTG CTTTGTAATGATTTTTGTACTTTTTTATGGTCACTGCTTAACTTCACATACTGATTTCCGTTAAAAATAC CAGCCAGTAAATGGGGGTGCATTTGAGTTCTGTTCTTTCCAAAGTACACTCAAAGTTTATTATGGCCTTG GCCTAGCATACACATTTTATTTTATTATACATGAGGTAATGTGCACACATTTTTTACAAATGCACCTGGA ATATATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAGGGGGATTTATAACTTGGGGAGGGAGGGT CAAATGAAGACAATTACTTATTGTATATGAAAACACATTTCTTTTAGGGAAGGACACCAAAGCATGTGAG C
Notes:	The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 74182. Forward Primer - name:074182_F_cDNA_Tjp1, sequence:TGTGTTTCTGTCCTGATTGACC; Reverse Primer - name:074182_N_SP6_cDNA_Tjp1, sequence:GCTCACATGCTTTGGTGTCCT. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:17956 same embryo
	EMAGE:17954 same embryo
	EMAGE:17955 same embryo
	EurExpress:euxassay_011726 same experiment
	MGI:4828731 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source