EMAGE mouse gene expression spatial database

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EMAGE:18142

Aldoc aldolase C, fructose-bisphosphate ( MGI:101863)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_011944. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_011944_01	euxassay_011944_02	euxassay_011944_03	euxassay_011944_04

euxassay_011944_05	euxassay_011944_06	euxassay_011944_07	euxassay_011944_08	euxassay_011944_09

euxassay_011944_10	euxassay_011944_11	euxassay_011944_12	euxassay_011944_13	euxassay_011944_14

euxassay_011944_15	euxassay_011944_16	euxassay_011944_17	euxassay_011944_18	euxassay_011944_19

euxassay_011944_20	euxassay_011944_21

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

18142_wholemount_strong.wlz

18142_wholemount_moderate.wlz

18142_wholemount_weak.wlz

18142_wholemount_possible.wlz

18142_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:18142_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

diencephalon lateral wall ventricular layer

moderate

regional

moderate expression: see section 11 12 14

telencephalon ventricular layer

moderate

regional

moderate expression: see section 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20

medulla oblongata alar plate ventricular layer

strong

regional

strong expression: see section 06 07 08 09 10 moderate expression: see section 05 11 12

medulla oblongata basal plate ventricular layer

strong

regional

strong expression: see section 07 08 09 10

pons ventricular layer

strong

regional

strong expression: see section 06 moderate expression: see section 04 05 11 12 13 14

midbrain ventricular layer

moderate

regional

moderate expression: see section 06 07 10 11 12 13

spinal cord ventricular layer

strong

regional

strong expression: see section 07 08

nasal cavity olfactory epithelium

strong

regional

strong expression: see section 07 08 16 17

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T30017
Entity Detected:	Aldoc, aldolase C, fructose-bisphosphate ( MGI:101863)
Sequence:	sense strand is shown >T30017 ATGCTGGGGCTGCTACTGAGGAGTTTATCAAGCGGGCAGAGATGAACGGGCTTGCAGCCCAGGGCAGATA TGAAGGCAGTGGAGATGGCGGAGCAGCAGCACAGTCCCTCTACGTCGCCAACCATGCCTACTGAGGCACG CTGACTCTACCCACAGCCCTTGGCCTAGCAATGCACACCCCATTTTGCCTATAGTCACAGCCAGGGCCAA ATAGCTATGCAGAACAGAGATATCTTTATCCAGCGCCAAGTCATCTCACATCTCACATGCCTTACATTGC TGTACCCGAGACCACAGGATGGGAGGGTAGAGATGCCCTCCCATGTTTGAAGATGGGGGGACTTTCTAGA AGTCAGAACAGAACATGTGGACCTTTTTCCTGTCTCCACCAGCCCTTACAGTTACCCTTGATGGTATAGT TTGTCCTTGGGCTCTGCTTGCTAATCTTCTCTCTTGGGATCAGGGGGACGTGAACT
Notes:	The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:3589205), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 12919. Forward Primer - name:012919_F_IRAV12-15_F19_Aldo3, sequence:ATGCTGGGGCTGCTACTG; Reverse Primer - name:012919_R_SP6_IRAV12-15_F19_Aldo3, sequence:GAGTTCACGTCCCCCTGA. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:18144 same embryo
	EMAGE:18143 same embryo
	EMAGE:18141 same embryo
	EMAGE:18145 same embryo
	EurExpress:euxassay_011944 same experiment
	MGI:4823089 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source