EMAGE mouse gene expression spatial database

Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:18416

Apitd1 apoptosis-inducing, TAF9-like domain 1 ( MGI:1917178)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_014366. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_014366_01	euxassay_014366_02	euxassay_014366_03	euxassay_014366_04

euxassay_014366_05	euxassay_014366_06	euxassay_014366_07	euxassay_014366_08	euxassay_014366_09

euxassay_014366_10	euxassay_014366_11	euxassay_014366_12	euxassay_014366_13	euxassay_014366_14

euxassay_014366_15	euxassay_014366_16	euxassay_014366_17	euxassay_014366_18	euxassay_014366_19

euxassay_014366_20	euxassay_014366_21	euxassay_014366_22	euxassay_014366_23	euxassay_014366_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

18416_wholemount_strong.wlz

18416_wholemount_moderate.wlz

18416_wholemount_weak.wlz

18416_wholemount_possible.wlz

18416_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:18416_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

rib

strong

regional

strong expression: see section 03 04 05 06 07 08 09 10 11 15 16 17 18 19 20 21 22 23 24

radius

strong

regional

strong expression: see section 01 02

humerus

strong

regional

strong expression: see section 01 02 03 04 05 21 22 23 24 weak expression: see section 20

forelimb digit 2 metacarpal

strong

regional

strong expression: see section 03

forelimb digit 3 metacarpal

strong

regional

strong expression: see section 02 03

hindlimb digit 2 phalanx

moderate

regional

moderate expression: see section 23

hindlimb digit 3 phalanx

strong

regional

strong expression: see section 05 moderate expression: see section 23

hindlimb digit 4 phalanx

strong

regional

strong expression: see section 05 moderate expression: see section 23

fibula

strong

regional

strong expression: see section 03

tibia

strong

regional

strong expression: see section 02 03 04 24

femur

strong

regional

strong expression: see section 03 04 05 06 07 08 09 10 20 21 22 24 moderate expression: see section 23

otic capsule

strong

regional

strong expression: see section 07 08 09 15 17 moderate expression: see section 16

nasal septum

strong

regional

strong expression: see section 13 weak expression: see section 14

viscerocranium

strong

regional

Expression in the turbinate bone.

meckel's cartilage

strong

regional

strong expression: see section 03 04 05 06 07 08 09 10 11 13 14 15 16 17 18 19 20 21 22

axial skeleton

strong

regional

strong expression: see section 08 09 10 11 13 14 15 16 17

basioccipital bone

strong

regional

strong expression: see section 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24

basisphenoid bone

strong

regional

strong expression: see section 08 09 10 11 12 13 14 15 16

temporal bone petrous part

strong

regional

strong expression: see section 01 02 03 04 05 18 19 20 21 22 23

vault of skull

strong

regional

strong expression: see section 19 20 21 22 23 24

orbito-sphenoid

strong

regional

strong expression: see section 01 02 03 04 05 06 07 08 18 19 20 21 22 23 24

clavicle

strong

regional

strong expression: see section 06 07 08 09 weak expression: see section 15 16 19

scapula

strong

regional

strong expression: see section 02 03 04 05 21 22 23

pelvic girdle skeleton

strong

regional

strong expression: see section 11 18 19

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T31847
Entity Detected:	Apitd1, apoptosis-inducing, TAF9-like domain 1 ( MGI:1917178)
Sequence:	sense strand is shown >T31847 GGAGTTCTCTCACCGGCAGAGGCTGAAGGCGGCAGTTCACTACACGGTCGGCTGTCTCTGCCAGGAAGTC ACGCTGAACAAACAGGTGAACTTCAGCAAACAGACCATCGCGGCGATCTCCGAGGTGACTTTTCGGCAGT GCGAAAATTTTGCCAAAGACCTTGAAATGTTTGCCAGGTGGGTAGAGAAGCTGGCAGTGTGATCTGAGGT CCACTGACATCATTGTCCACATCTGTTGGTGTATTTCGGGGTTCTTGTTTTCTGGGGGTGGGGGTTGTGG CTGATCATGACGCCGCTGGGGATTAACATCTGCTCTGAACACGTCAGTTCAGACCGCCTCGGTATTTCTG AGTTTTCTTGCGGGTCTCCGAGTGACCCAGCTCTGGCTGACAGAGGTCTGAGTTGCATCCCCAGGACTCT GCACTTGTGTGGCTG
Notes:	The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:6741262), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 63464. Forward Primer - name:063464_F_IRAW2_b02_2610040C18Rik, sequence:GGAGTTCTCTCACCGGCA; Reverse Primer - name:063464_R_SP6_IRAW2_b02_2610040C18Rik, sequence:GCAGCCACACAAGTGCAG. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:18414 same embryo
	EMAGE:18417 same embryo
	EMAGE:18415 same embryo
	EMAGE:18413 same embryo
	EurExpress:euxassay_014366 same experiment
	MGI:4823177 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source