Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:3374

Pax6 paired box gene 6 ( MGI:97490)
TS15 (28 Somite no.)
in situ hybridisation

Data Images
EMAGE:3374
Figure 6B of van Raamsdonk CD & Tilghman SM, 2000 [PMID:11076764] . Copyright: This image is from van Raamsdonk CD, Development 2000;127():5439-48, and is displayed with the permission of The Company of Biologists Limited who owns the Copyright.

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:3374Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
3374_wholemount_strong_3D_1.wlz
3374_wholemount_moderate_3D_1.wlz
3374_wholemount_possible_3D_1.wlz
3374_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:3374_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
optic cup outer layer
strong strong
regionalExpression is in the area of contact between the surface and the optic vesicle.
optic vesicle
strong strong
regionalExpression is in the area of contact between the surface and the optic vesicle.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:1927573
Entity Detected:Pax6, paired box gene 6 ( MGI:97490)
Sequence:sense strand is shown

>MGI:1927573
ACAACGACGAAAGAGAGGATGCCTCTTAAAGGCAGAAGACTTTAACCAAGGGCGGTGAGCAGATGTGTGA
GATCTTCTATTCTAGAAGTGGACGTATATCCCAGTTCTCAGAGCCCCGTATTCGAGCCCCGTGGGATCCG
GAGGCTGCCAACCAGCTCCAGCATGCAGAACAGTCACAGCGGAGTGAATCAGCTTGGTGGTGTCTTTGTC
AACGGGCGGCCACTGCCGGACTCCACCCGGCAGAAGATCGTAGAGCTAGCTCACAGCGGGGCCCGGCCGT
GCGACATTTCCCGAATTCTGCAGACCCATGCAGATGCAAAAGTCCAGGTGCTGGACAATGAAAACGTATC
CAACGGTTGTGTGAGTAAAATTCTGGGCAGGTATTACGAGACTGGCTCCATCAGACCCAGGGCAATCGGA
GGGAGTAAGCCAAGAGTGGCGACTCCAGAAGTTGTAAGCAAAATAGCCCAGTATAAACGGGAGTGCCCTT
CCATCTTTGCTTGGGAAATCCGAGACAGATTATTATCCGAGGGGGTCTGTACCAACGATAACATACCCAG
TGTGTCATCAATAAACAGAGTTCTTCGCAACCTGGCTAGCGAAAAGCAACAGATGGGCGCAGACGGCATG
TATGATAAACTAAGGATGTTGAACGGGCAGACCGGAAGCTGGGGCACACGCCCTGGTTGGTATCCCGGGA
CTTCAGTACCAGGGCAACCCACGCAAGATGGCTGCCAGCAACAGGAAGGAGGGGGAGAGAACACCAACTC
CATCAGTTCTAACGGAGAAGACTCGGATGAAGCTCAGATGCGACTTCAGCTGAAGCGGAAGCTGCAAAGA
AATAGAACATCTTTTACCCAAGAGCAGATTGAGGCTCTGGAGAAAGAGTTTGAGAGGACCCATTATCCAG
ATGTGTTTGCCCGGGAAAGACTAGCAGCCAAAATAGATCTACCTGAAGCAAGAATACAGGTATGGTTTTC
TAATCGAAGGGCCAAATGGAGAAGAGAAGAGAAACTGAGGAACCAGAGAAGACAGGCCAGCAACACTCCT
AGTCACATTCCTATCAGCAGCAGCTTCAGTACCAGTGTCTACCAGCCAATCCCACAGCCCACCACACCTG
TCTCCTCCTTCACATCAGGTTCCATGTTGGGCCGAACAGACACCGCCCTCACCAACACGTACAGTGCTTT
GCCACCCATGCCCAGCTTCACCATGGCAAACAACCTGCCTATGCAACCCCCAGTCCCCAGTCAGACCTCC
TCATACTCGTGCATGCTGCCCACCAGCCCGTCAGTGAATGGGCGGAGTTATGATACCTACACCCCTCCGC
ACATGCAAACACACATGAACAGTCAGCCCATGGGCACCTCGGGGACCACTTCAACAGGACTCATTTCACC
TGGAGTGTCAGTTCCCGTCCAAGTTCCCGGGAGTGAACCTGACATGTCTCAGTACTGGCCTCGATTACAG
TAAAGAGAGAAGGAGAGAGCATGTGATCGAGAGAGGAAATTGTGTTCACTCTGCCAATGACTATGTGGAC
ACAGCAGTTGGGTATTCAGGAAAGAAAGAGAAATGGCGGTTAGAAGCACTTCACTTTGTAACTGTCCTGA
ACTGGAGCCCGGGAATGGACTAGAACCAAGGACCTTGCGTACAGAAGGCACGGTATCAGTTGGAACAAAT
CTTCATTTTGGTATCCAAACTTTTATTCATTTTGGTGTATTATTTGTAAATGGGCATTGGTATGTTATAA
TGAAGAAAAGAACAACACAGGCTGTTGGATCGCGGATCTGTGTTGCTCATGTGGTTGTTTAAAGGAAACC
ATGATCGACAAGATTTGCCATGGATTTAAGAGTTTTATCAAGATATATCAAATACTTCTCCCCATCTGTT
CATAGTTTATGGACTGATGTTCCAAGTTTGTATCATTCCTTTGCATATAATTGAACCTGGGACAACACAC
ACTAGATATATGTAAAAACTATCTGTTGGTTTTCCAAAGGTTGTTAACAGATGAAGTTTATGTGCAAAAA
AGGGTAAGATATGAATTCAAGGAGAAGTTGATAGCTAAAAGGTAGAGTGTGTCTTCGATATAATACAATT
TGTTTTATGTCAAAATGTAAGTATTTGTCTTCCCTAGAAATCCTCAGAATGATTTCTATAATAAAGTTAA
TTTCATTTATATTTGACAAGAATACTCTATAGATGTTTTATACACATTTTCATGCAATCATTTGTTTCTT
TCTTGGCCAGCAAAAGTTAATTGTTCTTAGATATAGCTGTATTACTGTTCACAGTCCAATCATTTTGTGC
ATCTAGAATTCATTCCTAATCAATTAAAAGTGCTTGCAAGAGTTTTAAACCTAAGTGTTTTGCAGTTGTT
CACAAATACATATCAAAATTAACCATTGTTGATTGTAAAAAAAAAACCATGCCAAAGCCTTTGTATTTTC
TTTATTACCCTTGACCGTAAGACATGAATTC
nt 1 - nt 2481 of X63963.1
Notes:The Pax6 probe used in this study by van Raamsdonk & Tilghman, 2000 [PMID:11076764] is described as "antisense RNA derived from full-length Pax6 cDNA (Walther & Gruss, 1991 [PMID:1687460] )." The full length sequence shown in Fig 2 therein corresponds to GenBank X63963.1.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C3H/HeJ
Age:28 Somite no.
Theiler Stage:TS15
Mutations:Pax6Sey-Neu/Pax6+
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
General Information
Authors:van Raamsdonk CD & Tilghman SM, 2000 [PMID:11076764] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ PMID:11076764] van Raamsdonk CD, Tilghman SM 2000 Dosage requirement and allelic expression of PAX6 during lens placode formation. Development (127):5439-48
 [ PMID:1687460] Walther C, Gruss P 1991 Pax-6, a murine paired box gene, is expressed in the developing CNS. Development (113):1435-49
Links:MGI:1928215 same experiment
 MGI:1856158 allele description
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI