EMAGE mouse gene expression spatial database

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EMAGE:3512

Hoxa3 homeobox A3 ( MGI:96175)
TS15 (9.5 dpc)
in situ hybridisation

Data Images


Fig6G.Copyright: Reprinted with permission from Elsevier from [doi:10.1016/S0925-4773(02)00345-3] Mech Dev 119: 127-35, Ohnemus S; Kanzler B; Jerome-Majewska LA; Papaioannou VE; Boehm T; Mallo M, Aortic arch and pharyngeal phenotype in the absence of BMP-dependent neural crest in the mouse. Copyright 2002.

Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Notes:

Note: The arrow indicates the third pharyngeal pouch. The arrowhead indicates the third branchial arch neural crest.

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

3512_wholemount_strong_3D_1.wlz

3512_wholemount_moderate_3D_1.wlz

3512_wholemount_possible_3D_1.wlz

3512_wholemount_notDetected_3D_1.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:3512_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

3rd branchial pouch endoderm

detected

Annotation Validation:

EMAGE Editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	MGI:3046991
Entity Detected:	Hoxa3, homeobox A3 ( MGI:96175)
Sequence:	sense strand is shown >MGI:3046991 GCGCCGCAGCAAGTCAGCCTGGTTAAGTCCAAGCTGAATTCGCGGCCGCTAGAAGCTTCTGGGAGCCGCG GTCTGAAGGCTACGTGTGCTGCCTGGTCATTCAAAGTGTCAATTTTAGGTCCAGAAGTGTCCAAACCACA AGTTCTCAAAACTCTGAAAAATGGCTCCCTCCATGTTAAGAGTGCCTGGACACTGGAAAAAAAGATTCCC TGAGCACCTGGAACTGGAGACCATTCCTGGTTCAGATTTAAACATCTTTGGAGGTTTGCGCGCGGCGGCC ATTGGCGGCGGAGTGTCACGTGACCGCGGGGGCGTGCCAATGTGCTCCCTTACGGGTGTCAAGCCCTTGT CAGAGAGTGTGATCACGATCGTGAAACATCGCGATGCAAAAAGCGACCTACTACGACAGCTCAGCGATCT ACGGTGGCTACCCCTACCAAGCAGCCAATGGGTTCGCTTACAATGCCAGTCAGCAGCCATACGCGCCGTC CGCCGCTCTGGGCACCGATGGCGTTGAGTACCATCGACCTGCCTGCTCCCTCCAGTCTCCCGCCAGCGCT GGGGGCCACCCCAAAACTCATGAGCTGAGCGAAGCTTGTCTGCGCACCCTGAGCGGCCCTCCTAGTCAGC CCCCAGGCCTGGGTGAACCACCTTTGCCTCCACCTCCTCCCCAGGCAGCGCCCCCAGCGCCCCAGCCTCC ACAGCCCCCACCACAGCCCCCTGCGCCCACCCCTGCAGCTCCTCCGCCTCCCTCGTCTGTCTCTCCCCCT CAAAGTGCCAACAGCAACCCTACCCCTGCCAGCACAGCCAAGAGCCCCCTGCTCAACTCTCCCACCGTGG GCAAACAAATCTTTCCCTGGATGAAAGAGTCAAGGCAGAACACTAAGCAGAAAACCAGCGGCTCCAGCTC AGGGGAGAGCTGCGCTGGTGACAAGAGCCCGCCTGGGCAGGCCTCGTCCAAGCGCGCGCGCACGGCGTAC ACGAGCGCGCAGCTGGTAGAGCTGGAGAAGGAGTTCCACTTCAACCGCTACCTATGCCGGCCGCGCCGGG TGGAGATGGCCAACCTGCTGAACCTCACCGAGCGCCAGATCAAGATCTGGTTCCAGAACCGCCGCATGAA GTACAAGAAAGACCAGAAGGGCAAAGGCATGCTGACCTCGTCTGGGGGCCAGTCCCCAAGTCGGAGCCCT GTGCCTCCCGGTGCAGGAGGCTATCTGAATTCTATGCATTCGCTGGTCAACAGTGTCCCATATGAGCCCC AGTCACCCCCTCCTTTCTCCAAGCCTCCCCAAGGCGCCTATGGGTTGCCTCCGGCCTCCTACCCTGCTCC CCTGCCCAGCTGCGCTCCCCCACCTCCCCCACAGAAACGCTACACAGCGGCGGGGTCAGGCGCAGGGGGC ACCCCTGACTACGACCCGCATGCTCACGGCCTGCAGGGCAATGGCAGCTATGGGACCCCACACTTACAGG GAAGCCCCGTCTTCGTAGGGGGCAGCTATGTGGAGCCCATGAGCAACTCTGGGCCACTCTTTGGCCTAAC TCACCTCCCCCACACCACCTCGGCTGCCATGGACTACGGGGGCACTGGGCCGCTGGGCAGCGGACACCAC CATGGGCCGGGGCCTGGGGAGCCACACCCCACCTACACGGACCTTACTGCCCACCATCCTTCTCAGGGAA GAATTCAGGAAGCGCCCAAGCTCACCCACCTGTGATGATGGGCCCAGGGCTGTGAGCCAGGAGAGTTGCC CACCCGACCTTCTTTGGTTACTTTTTCCTTTTTTTGTTTTGTTCTATGTTCTTGCCTTTCCCTTTTCTCC TCTGCACCCCTCCCTCATTTTGTTTTCTTTGGTAATGCGTTTTTATAGTTTATGTGACGTAGCAATCTTG GTTGCTGGAAAGGCTGTCAGTATCAGTAGCAACATTTAC
	nt 1 - nt 1929 of Y11717.1
Notes:	The Hoxa3 probe used in this study by Ohnemus et al., 2002 [PMID:12464426] is described as "a full length Hoxa3 probe derived from a thymus cDNA library, accession number Y11717; M. Hofmann and T. Boehm, unpublished data)".
Chemistry:	RNA
Strand:	antisense

Specimen

Organism:	mouse
Age:	9.5 dpc
Theiler Stage:	TS15
Mutations:	none (wild-type)
Preparation:	wholemount

Procedures

General Information

Authors:	Ohnemus S; Kanzler B; Jerome-Majewska LA; Papaioannou VE; Boehm T; Mallo M, 2002 [PMID:12464426] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	non-screen
References:	[ doi:10.1016/S0925-4773(02)00345-3] [ PMID:12464426] Ohnemus S, Kanzler B, Jerome-Majewska LA, Papaioannou VE, Boehm T, Mallo M 2002 Aortic arch and pharyngeal phenotype in the absence of BMP-dependent neural crest in the mouse. Mech Dev (119):127-35
Links:	MGI:3046992 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source