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EMAGE:3650

Foxc1 forkhead box C1 ( MGI:1347466)
TS11 (EHF Downs & Davies)
in situ hybridisation

Data Images
EMAGE:3650 EMAGE:3650
Figure 6A. Copyright: This image is from Sasaki H, Development 1993 May;118(1):47-59, and is displayed with the permission of The Company of Biologists Limited who owns the Copyright. Figure 5D. Copyright: This image is from Sasaki H, Development 1993 May;118(1):47-59, and is displayed with the permission of The Company of Biologists Limited who owns the Copyright.

Expression pattern clarity: three stars
Find spatially similar expression patterns: Find spatially similar patterns
Notes:
A: Section of an early head fold stage embryo. Plane of section is indicated in Fig. 5D. de, definitive endoderm; e, epiblast; m, non-notochordal mesoderm; n, node; nc, notochord; ov, otic vesicle; pp, prechordal plate; ps, primitive streak. Scale bars: 100um.
Expression Pattern Description
Spatial Annotation:
EMAGE:3650EMAGE:3650Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
3D mappingspatial mapping

View mapped 3D expression image EMAGE genex expression entry
Download individual expression domains:
3650_voxel_strong_3D_1.wlz
3650_voxel_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:3650_all_domains.zip
Find spatially similar expression patterns: EMAGE spatially similar patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
embryo mesoderm
detected detected
gradedExpression is restricted to non-notochordal mesoderm and is higher in paraxial mesoderm, lower in lateral mesoderm.
embryo ectoderm
not detected not detected
homogeneousExpression is absent from the epiblast, endoderm, primitive streak, notochord and node.
embryo endoderm
not detected not detected
homogeneousExpression is absent from the epiblast, endoderm, primitive streak, notochord and node.
primitive streak
not detected not detected
homogeneousExpression is absent from the epiblast, endoderm, primitive streak, notochord and node.
node
not detected not detected
homogeneousExpression is absent from the epiblast, endoderm, primitive streak, notochord and node.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:19192
Entity Detected:Foxc1, forkhead box C1 ( MGI:1347466)
Notes:The Foxc1 (MF-1) probe used in this study by Sasaki & Hogan, 1993 [PMID:8375339] was transcribed from the entire insert of clone c52, which is 1kB in length. Editors note: the region of the cDNA or actual sequence of this 1kb clone is not reported in this publication.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:(ICR x Swiss Webster)F1
Age:EHF Downs & Davies
Theiler Stage:TS11
Mutations:none (wild-type)
Preparation:sectioned wholemount
Procedures
Fixation:4% paraformaldehyde
Embedding:paraffin
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Sasaki H & Hogan BL, 1993 [PMID:null] 8375339. Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ PMID:8375339] Sasaki H, Hogan BL 1993 Differential expression of multiple fork head related genes during gastrulation and axial pattern formation in the mouse embryo. Development (118):47-59
Links:MGI:1339085 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI