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EMAGE:3651

Foxc1 forkhead box C1 ( MGI:1347466)
TS14 (9.0 dpc)
in situ hybridisation

Data Images
EMAGE:3651 EMAGE:3651
Fig5G.Copyright: This image is from Sasaki H, Development 1993 May;118(1):47-59, and is displayed with the permission of The Company of Biologists Limited who owns the Copyright. Fig6C.Copyright: This image is from Sasaki H, Development 1993 May;118(1):47-59, and is displayed with the permission of The Company of Biologists Limited who owns the Copyright.

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Find spatially similar expression patterns: Find spatially similar patterns
Notes:
6C is a section taken from the embryo shown in 5G. Image annotations: b, branchial arch; ev, eye vesicle; ov, otic vesicle; fg, foregut; h, heart. Scale bars: 500um (in 5G) and 250um (in 6C).
Expression Pattern Description
Spatial Annotation:
EMAGE:3651EMAGE:3651EMAGE:3651Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
3D mappingspatial mappingwholemount mapping

View mapped 3D expression image EMAGE genex expression entry
Download individual expression domains:
3651_wholemount_strong_3D_2.wlz
3651_wholemount_moderate_3D_1.wlz
3651_wholemount_notDetected_3D_2.wlz
3651_voxel_strong_3D_1.wlz
3651_voxel_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:3651_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Find spatially similar expression patterns: EMAGE spatially similar patterns
Morphological match to the template: one star
Text Annotation:
StructureLevelPatternNotes
1st branchial arch
detected detected
regionalExpression is detected in neural-crest-derived cells of the first branchial arch and in somitomere-derived cells.
head somite
detected detected
regionalExpression is detected in neural-crest-derived cells of the first branchial arch and in somitomere-derived cells.
mesenchyme
detected detected
regionalExpression is uniform in all non-notochordal mesoderm except the heart.
notochord
not detected not detected
homogeneous
central nervous system
not detected not detected
homogeneousExpression is absent from the neural tube (Fig6C).
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:19192
Entity Detected:Foxc1, forkhead box C1 ( MGI:1347466)
Notes:The Foxc1 (MF-1) probe used in this study by Sasaki & Hogan, 1993 [PMID:8375339] was transcribed from the entire insert of clone c52, which is 1kB in length. Editors note: the region of the cDNA or actual sequence of this 1kb clone is not reported in this publication.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:(ICR x Swiss Webster)F1
Age:9.0 dpc
Theiler Stage:TS14
Mutations:none (wild-type)
Preparation:unknown
Procedures
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Sasaki H & Hogan BL, 1993 [PMID:8375339] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ PMID:8375339] Sasaki H, Hogan BL 1993 Differential expression of multiple fork head related genes during gastrulation and axial pattern formation in the mouse embryo. Development (118):47-59
Links:MGI:1339085 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI