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EMAGE:4276

Slain1 SLAIN motif family, member 1 ( MGI:2145578)
TS15 (9.5 dpc)
in situ hybridisation

Data Images
EMAGE:4276
Fig9L. Copyright: Reprinted with permission from Elsevier from [doi:10.1016/j.ydbio.2006.01.023] Dev Biol 293: 90-103, Hirst CE; Ng ES; Azzola L; Voss AK; Thomas T; Stanley EG; Elefanty AG, Transcriptional profiling of mouse and human ES cells identifies SLAIN1, a novel stem cell gene. Copyright 2006

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Image annotations: hb - hindbrain.
Expression Pattern Description
Spatial Annotation:
EMAGE:4276Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
4276_wholemount_strong_3D_1.wlz
4276_wholemount_moderate_3D_1.wlz
4276_wholemount_weak_3D_1.wlz
4276_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:4276_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
future midbrain
detected detected
future hindbrain
detected detected
tail
detected detected
trunk somite
detected detected
regionalExpression was detected in the dorsal aspects of somites.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:3640826
Entity Detected:Slain1, SLAIN motif family, member 1 ( MGI:2145578)
Sequence:sense strand is shown

>MGI:3640826
CCATGGGATATAAATTACAGGACCTTACTGATGTTCAGATCATGGCTCGTCTGCAAGAAGAGAGTCTCAG
GCAAGACTACGCTTCCACGTCAGCATCAGTGTCCAGAAACAGTTCCAGTGTATCCCTGAGTTCAGGGAAA
AAGGGGACATGCAGTGATCAAGAGTATGATCGCTACAGCCTGGAGGACGAGGAAGAGTTTGACCATCTGC
CGCCACCCCAGCCCCGTCTTCCGAGGTGTTCACCTTTCCAAAGAGGGATCCCCCACTCACAGACTTTCTC
CAGCATCCGGGATTGCAGGAGGAGCCCCAGTACCCAGTATTTCCCCTCAAATAACTTCCAGCAGCCACAG
TATTACCCACCTCAAGCCCAGACTGCAGACCAGCAACCAAATAGGACCAATGGAGATAAGCTACGAAGAA
GCATGCCTAATCTGGCCCGGATGCCGAGCACCGCTGCGGCCAGCAGCAACCTCAGCTCTCCTGTGACAGT
GAGGAGCAGTCAGAGCTTTGACTCCAGCTTGCATGGAGCTGGAAGTGGGGTTTCTCGGGTACCGTCCTGC
ATCCCGTCACCAGGACAGATTCAGCACAGAGTTCACAGCGTGGGCCACTTCCCAGTGCCCATCCGGCAGC
CCCTGAAGGCCACAGCCTATGTGAGCCCAACTGTTCAAGGCAGCAGCAGCAGCGGCAGCAGTGGTAGCAG
CGGCGGCAGCGGCAGCGGCATGCCTTTATCCAATGGCACGCAGTTATATTCCACCACGGGCATCCCTACT
CCGAACAAAGCTGCGGCTTCTGGGATCCTGGGTCGCAGCGCCCTTCCGAGACCTTCACTGGCAATAAATG
GGAGTAACCTGCCTCGGAGCAAGATTGCACAGCCTGTCAGAAGCTTCCTGCAGCCTCCCAAGCCTCTGTC
TTCACTCAGCACACTGAGGGATGGAAATTGGAGAGACGGTTGCTA
nt 894 - nt 1848 of BC079866.1
Notes:The Slain1 probe used in this study by Hirst et al., 2006 [PMID:16546155] is described as follows: "A probe coding for nucleotides 894 to 1848 of the mouse Slain1 cDNA (accession number BC079866) was cloned into pBluescriptKS."
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Age:9.5 dpc
Theiler Stage:TS15
Mutations:none (wild-type)
Preparation:wholemount
Procedures
General Information
Authors:Hirst CE; Ng ES; Azzola L; Voss AK; Thomas T; Stanley EG; Elefanty AG, 2006 [PMID:16546155] , Indexed by GXD, Spatially Mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1016/j.ydbio.2006.01.023] [ PMID:16546155] Hirst CE, Ng ES, Azzola L, Voss AK, Thomas T, Stanley EG, Elefanty AG 2006 Transcriptional profiling of mouse and human ES cells identifies SLAIN1, a novel stem cell gene. Dev Biol (293):90-103
Links:MGI:3640839 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI