EMAGE mouse gene expression spatial database

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EMAGE:4603

Foxe3 forkhead box E3 ( MGI:1353569)
TS18 (10.5 dpc)
in situ hybridisation

Data Images


Figure 6I. Copyright: This image is from Faber SC, Development 2001;128():4425-4438 [PMID:11714669] and is displayed with the permission of The Company of Biologists Limited who owns the Copyright.

Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Notes:

Note: first branchial arch (1ba) is outlined in gray and the optic cup with a broken line.

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

4603_wholemount_possible.wlz

4603_wholemount_notDetected.wlz

4603_wholemount_strong.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:4603_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

lens pit

detected

Annotation Validation:

EMAGE Editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	MGI:2157323
Entity Detected:	Foxe3, forkhead box E3 ( MGI:1353569)
Sequence:	sense strand is shown >MGI:2157323 CCTCTCCTCGGGAGGTGGGAGTGTGTGTGTCCATATAAGGCGAACCTGCGACCCCCGCTCTCCGGGGCGC GAGCAGGGACTCCGCATCCCTAGGACCCCCACCCCCACCCCCCGCACATGGATGCGCAAGTCGCTTTCTC GGGCTTCCCGGCCTTGCCCTCGCTCACGCCGTCCGGGCCGCAGCTGCCGACGCTGGCGGGAGCCGAACCG GGGCGCGAACCGGAGGAAGTGGTGGGCGGTGGGGACGCCGAGCCCACGGCCGTGCCTGGCCCGGGGAAGC GACGGCGGCGGCCACTACAGCGTGGGAAGCCGCCCTACTCATACATCGCGCTCATTGCCATGGCCCTGGC GCACGCTCCGGGCCGCCGTCTAACGCTGGCAGCCATCTACCGCTTCATCACCGAGCGCTTCGCCTTCTAC CGCGACAGCCCGCGCAAGTGGCAGAACAGCATCCGCCACAACCTCACCCTCAACGACTGTTTCGTCAAGG TGCCGCGCGAGCCGGGCAATCCGGGCAAGGGCAACTACTGGACGCTCGATCCCGCGGCCGCTGACATGTT CGACAACGGTAGCTTCCTGCGGCGCCGCAAGCGCTTCAAGCGCGCTGAGCTGCCCGCACCGCCGCCGCCG CCGCCGCCCTTCCCCTATGCGCCCTTCCCGCCCCCGCCAGCACCCGCGTCCGCTCCGCCCGCGCGCCTCT TCCGCCTGGACAGCCTGTTGGGCTTGCAGCCTGAGCCGCCGGGACCCGTGGCGCCCGAGCCGCCTTGCTG CGCCGCGCCCGACGCCGCCTTCCCGCCCTGTGCCGCCGCAGCCTCGCCGCCGCTCTACTCGCCAGCGTCC GAGCGCCTGGGGTTACCCGCGCCGCTGCCCGCCCAGCCTCTCCTGGCCTTGGCGGGATCGGCCGGCGCGC TCGGGCCGCTCGGAGCCGGGGAAGCCTACCTGAGACAGCCGGGCTTCGCGCCGGGGCTGGAGCGCTACCT GTGAGTCGCTTTCCGCTGCGGGAGCGCCTGGTGGAGCCTTCTGCCCCGGCCTGCGCTGGAGCAGTGCGAG CTTGTCCGTGGTAC
	nt 3729 - nt 4792 of AF142647.1
Notes:	The Foxe1 probe used in this study by Faber et al., 2001 [PMID:11714669] is described as the "entire intronless genomic clone on a ApaI-KpnI fragment of 1064 bp (Brownell et al., 2000 [PMID:10890982] )". Editors Note: this 1064nt intronless genomic region equates to nt 3729-4792 inclusive in the cDNA (AF142647.1).
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Age:	10.5 dpc
Theiler Stage:	TS18
Mutations:	none (wild-type)
Preparation:	wholemount

Procedures

Fixation:

4% paraformaldehyde

General Information

Authors:	Faber SC; Dimanlig P; Makarenkova HP; Shirke S; Ko K; Lang RA, 2001 [PMID:11714669] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	non-screen
References:	[ PMID:11714669] Faber SC, Dimanlig P, Makarenkova HP, Shirke S, Ko K, Lang RA 2001 Fgf receptor signaling plays a role in lens induction. Development (128):4425-38
	[ doi:10.1002/1526-968X(200006)27:2<81::AID-GENE50>3.0.CO;2-N] [ PMID:10890982] Brownell I, Dirksen M, Jamrich M 2000 Forkhead Foxe3 maps to the dysgenetic lens locus and is critical in lens development and differentiation. Genesis (27):81-93
Links:	MGI:2157344 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source