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EMAGE:919

Pax1 paired box gene 1 ( MGI:97485)
TS17
in situ hybridisation

Data Images
EMAGE:919
Fig 1A Wallin et al, 1994 [PMID:8026324] . Copyright: This image is from Development and is displayed with the permission of the Company of Biologists Ltd who owns the copyright.

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Image annotations: Arrows - segment boundaries.
Expression Pattern Description
Spatial Annotation:
EMAGE:919Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
919_wholemount_strong_3D_1.wlz
919_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:919_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
trunk somite
detected detected
regionalThe caudal part of the sclerotome has higher expression and the expression extends more dorsally than expression in the cranial part of the sclerotome
tail somite
detected detected
regionalThe caudal part of the sclerotome has higher expression and the expression extends more dorsally than expression in the cranial part of the sclerotome
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:1309770
Entity Detected:Pax1, paired box gene 1 ( MGI:97485)
Sequence:sense strand is shown

>MGI:1309770
CTGGCCGGCCCGCGCGCGATGGAGCAGACGTACGGCGAAGTGAACCAACTTGGTGGCGTGTTCGTCAACG
GCCGTCCCCTGCCCAATGCCATCCGCCTACGAATCGTGGAGCTAGCACAGCTGGGTATCCGACCCTGTGA
CATCAGTAGGCAACTGCGGGTCTCTCATGGCTGCGTGAGCAAAATCCTGGCGCGCTACAACGAGACCGGC
TCCATCCTGCCCGGGGCCATCGGGGGCAGCAAACCTCGAGTTACCACCCCCAATGTAGTGAAGCACATCC
GGGACTACAAACAGGGGGATCCTGGCATCTTTGCCT
nt 292 - nt 607 of NM_008780
Notes:The probe used in this study by Wallin et al, 1994 [PMID:8026324] is described as "a HincII-SacI paired box fragment".
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Theiler Stage:TS17
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
General Information
Authors:Wallin et al, 1994 [PMID:8026324] Indexed by GXD, Spatially mapped by EMAGE
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ PMID:8026324] Wallin J, Wilting J, Koseki H, Fritsch R, Christ B, Balling R 1994 The role of Pax-1 in axial skeleton development. Development (120):1109-21
Links:MGI:1334712 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI