EMAGE mouse gene expression spatial database

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EMAGE:11187

Ttc22 tetratricopeptide repeat domain 22 ( MGI:3045307)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_001176. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_001176_01	euxassay_001176_02	euxassay_001176_03	euxassay_001176_04

euxassay_001176_05	euxassay_001176_06	euxassay_001176_07	euxassay_001176_08	euxassay_001176_09

euxassay_001176_10	euxassay_001176_11	euxassay_001176_12	euxassay_001176_13	euxassay_001176_14

euxassay_001176_15	euxassay_001176_16	euxassay_001176_17	euxassay_001176_18	euxassay_001176_19

euxassay_001176_20	euxassay_001176_21	euxassay_001176_22	euxassay_001176_23	euxassay_001176_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

11187_wholemount_strong.wlz

11187_wholemount_moderate.wlz

11187_wholemount_weak.wlz

11187_wholemount_possible.wlz

11187_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:11187_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

external naris epithelium

weak

regional

weak expression: see section 12 13 16

anal canal

weak

regional

weak expression: see section 15 16

bladder

weak

regional

weak expression: see section 14 15 16

kidney calyx

moderate

regional

moderate expression: see section 21 weak expression: see section 08 09 10 11 17 18 19 20

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T1111
Entity Detected:	Ttc22, tetratricopeptide repeat domain 22 ( MGI:3045307)
Sequence:	sense strand is shown >T1111 TCCTCGAGNCTGTTGGCCTACTGGGCAAGAGGTGCCCCGGACCGCCGTGCGGGGCTCCCTCCGGGGCCGC CCCATCCACTGTCCTTGGGAGCTAGGGGAGGCCAGGGCAGTCAGGGGCAGCCATGACGGAGGCCGAGGTC GGAGCCGAGGACCTGGACACCCTTCTCGATGAACTGGACTATCTGCCCGGCCACTTCCACCTGGAGATGC AGCTCAACTTCGAGCCGCGCTCACCCGCTCAGCTGCGCGCCCGGGACCTGAAGCTCCAGCGAGAGGGTCT GCGGCAGGAGCTGGAGCTGGTGGCCACCCCGCAGCTGCCTGCCGTGCGTCACCTCTTGGGAACCTTTTCC TTCTACCTGGAGGAGCTGGGTGATGCCCGCGAGCATTTCCTGGAAGTGGCCCGCAAAGACCCTGGCAACC TCAACGCCTGGGCCAATCTGGCACACGTCTACGGGCAGCTGGGCCAGGAAGAAGAGGAGGAGGCGTCCGC CGGGCGACTGGCCAGCCTCATGGGCCTGGAAGGGGACCCCGAGGATGCTGGAGACCCCAGGCTCCGCGCT GCCCGCTGCCTGGCGGAGCAGGGAT
Notes:	The probe template was PCR amplified from IMAGE:2135311 using vector specific primers. Forward Primer - name:T7-pME18S-FL3-fw, sequence:CGTAATACGACTCACTATAGGGCCTTCTGCTCTAAAAGCTGCG; Reverse Primer - name:T3-pME18S-FL3-rv, sequence:CAAATTAACCCTCACTAAAGGGCGACCTGCAGCTCGAGCAC. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:2135311 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:11191 same embryo
	EMAGE:11188 same embryo
	EMAGE:11189 same embryo
	EMAGE:11190 same embryo
	EurExpress:euxassay_001176 same experiment
	MGI:4828983 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source