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EMAGE:15299

Ak1 adenylate kinase 1 ( MGI:87977)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:15299 EMAGE:15299 EMAGE:15299 EMAGE:15299 EMAGE:15299
"Pseudo-wholemount" of euxassay_010452. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_010452_01 euxassay_010452_02 euxassay_010452_03 euxassay_010452_04
EMAGE:15299 EMAGE:15299 EMAGE:15299 EMAGE:15299 EMAGE:15299
euxassay_010452_05 euxassay_010452_06 euxassay_010452_07 euxassay_010452_08 euxassay_010452_09
EMAGE:15299 EMAGE:15299 EMAGE:15299 EMAGE:15299 EMAGE:15299
euxassay_010452_10 euxassay_010452_11 euxassay_010452_12 euxassay_010452_13 euxassay_010452_14
EMAGE:15299 EMAGE:15299 EMAGE:15299 EMAGE:15299 EMAGE:15299
euxassay_010452_15 euxassay_010452_16 euxassay_010452_17 euxassay_010452_18 euxassay_010452_19
EMAGE:15299 EMAGE:15299 EMAGE:15299 EMAGE:15299
euxassay_010452_20 euxassay_010452_21 euxassay_010452_22 euxassay_010452_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:15299Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
15299_wholemount_strong.wlz
15299_wholemount_moderate.wlz
15299_wholemount_weak.wlz
15299_wholemount_possible.wlz
15299_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:15299_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
diaphragm
moderate moderate
regionalmoderate expression: see section 22 weak expression: see section 02 03 04 05 06 07 08 16 17 18 19 20 21
vertebral axis musculature
moderate moderate
regionalmoderate expression: see section 22 23 weak expression: see section 01 02 03 04 05 06 07 08 09 10 11 13 14 15 16 17 18 19 20 21
nasal cavity olfactory epithelium
weak weak
regionalweak expression: see section 10 11 12 14 15 16
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T30214
Entity Detected:Ak1, adenylate kinase 1 ( MGI:87977)
Sequence:sense strand is shown

>T30214
ACCATCAAGAAGCGGCTGGAGACTTATTACAATGCCACAGAACCTGTCATCTCCTTCTATGACAAGCGTG
GCATTGTGCGCAAGGTCAATGCCGAAGGCACGGTGGACACTGTCTTCTCTGAGGTCTGCACCTATCTTGA
CTCCCTGAAGTAACTGGATCCCTTGGCCAGCTCCCAGCCCGCCCCACCCTTGCTCCCTGACCCCAGGCAG
CCTGGCTCAAGCCCAGCACCTCCACCCTGCCGGGCTGTGCACAGACACAGGAAGCCATGTTATCCTGTCC
CATGGACACTAAAGAAATTGCCAAGGAGGGTTAGGATTGCTCCTTTCCTTTGCTTCCAGTTATGGTGATT
CATGCTGCCACAGCCGGAGGCCCCAGCGTGGCCGGCCCATTCTTCCCTGTGCCTCAGCCCAGCTGTCTTG
TCTCCCTCTGGCTCTGCTGGGATCCTAGGCCCTTCCTTAGCCAGGCTGTGTCAAAGCCTAGGGGTCCCTG
GGTTGGCAGGCTGCTCTGGGGGGTCTGGTGTTCACCCTGTTTCTCATAGCCTCGTTGTGTGGCTTTGGCC
CTAAGCCATTGTCTCTCTGGAGTGAGTTTTCTTTTTTTCTTTCTTTCTTTTTCTTTTTTTTCTTTCTCTG
TTTCTTTCTTTTTTTTTTTTTTTTAAGACAGCATCTCGTGTGACTTAAGCTGGCCTCAACCCTGTTATGT
AACTAAGGGCAACCTTAATCCTTCTGCCTCCACTTGTCTTCCTGTGTGCTGAGATTACAGGTGTGTGTGT
GGACCTCCACCACTCCTGGTTTTGGGGGCACTGGGAATCAAGCCCAT
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:4505142), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 9304. Forward Primer - name:009304_F_IRAV51-54_O19_Ak1, sequence:ACCATCAAGAAGCGGCTG; Reverse Primer - name:009304_R_SP6_IRAV51-54_O19_Ak1, sequence:CATGGGCTTGATTCCCAG. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:15302 same embryo
 EMAGE:15304 same embryo
 EMAGE:15301 same embryo
 EMAGE:15300 same embryo
 EMAGE:15303 same embryo
 EurExpress:euxassay_010452 same experiment
 MGI:4823055 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS