EMAGE mouse gene expression spatial database

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EMAGE:20195

Tanc1 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 ( MGI:1914110)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_012462. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_012462_01	euxassay_012462_02	euxassay_012462_03	euxassay_012462_04

euxassay_012462_05	euxassay_012462_06	euxassay_012462_07	euxassay_012462_08	euxassay_012462_09

euxassay_012462_10	euxassay_012462_11	euxassay_012462_12	euxassay_012462_13	euxassay_012462_14

euxassay_012462_15	euxassay_012462_16	euxassay_012462_17	euxassay_012462_18	euxassay_012462_19

euxassay_012462_20	euxassay_012462_21	euxassay_012462_22

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

20195_wholemount_strong.wlz

20195_wholemount_moderate.wlz

20195_wholemount_weak.wlz

20195_wholemount_possible.wlz

20195_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:20195_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

olfactory cortex ventricular layer

weak

homogeneous

weak expression: see section 11 12 16 17

telencephalon ventricular layer

weak

homogeneous

weak expression: see section 03 04 05 06 07 08 09 10 11 12 13 15 16 17 18 19 20 21 22

mandible

weak

regional

weak expression: see section 06 07 08 16 17 18 19

maxilla

weak

regional

weak expression: see section 07 08 17 18 19

metanephros

weak

regional

weak expression: see section 05 06 07 08 09 15 16 17 18

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T30447
Entity Detected:	Tanc1, tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 ( MGI:1914110)
Sequence:	sense strand is shown >T30447 TACAACCCAGGTGCAGGGTGGCACTGCCGAACACAGGCCCCGCAACACTCCATTTATGGGCATCATGGAC AAGACCGCCAGGTTCCAGCAGCAAAGCAATCCTCCGAACCGCTCCTGGCACTGCCCGGTGGCAGAGGGGC TACTGACAAACACAGCCACTGCAGCTGGCCTGCAGTCTAACTCTGAGAAACCCACTCTCAAGCCAGGAGG ATACTGTAGCCAAGCCAAACCGTGTTCAGTTCCTCCCCTGAGCATGGGTGTCCACAATGGGGCTCAGGTG AAGGAGCTGGAAGAGAACAAGTGCCAAATCCCAGCCCTCTGTCAAGATAACAGGATAACTAAGGGGGTTC CTCATCTCTACCCAGAGGGCGTCTCTAAGCAGCCACTTCATGTCAGTACGGAAGCCCACAGGAGCCACCT CACTTCAGCAAAACCAAAGCGATCGTTCATAGAGTCCAATGTGTGAGCCTTAAGCAACCCCTGTGTAGAA TCTGGAGGCAGTCTGTTGGCTCGTGGTAATAAATGATGTCTCTTTTTCTTTTCATAATAAAAATTACATG TTAGCCATATTTTCCACCTCTTGGGTGGATCTGATGCCATTGACATATTAAAACTGTAGGATAAAACTAT AATTAGTAGCTAGAAATCAGCCATAAACAGAAGTACTAAACAGCATTGAACACTGTTGTCAGCTTATATC TGGCGATTTAAAGGCTGCCAAGAAGACATCAACTGATGCCGTTCTCTTAGGAGATTATTTGGCTTGCTCT GTGTAAAAGCACACGTACTTAGAGAAGGAAAAAAAAAATCCACTGGTAAAAGTTAACTCCTGACATAATA TCTGGAAAATTCTGGAAAAGATGGGGAGGG
Notes:	The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:6506175), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 58648. Forward Primer - name:058648_F_IRAV105_g05_1200003E16Rik, sequence:TACAACCCAGGTGCAGGG; Reverse Primer - name:058648_R_SP6_IRAV105_g05_1200003E16Rik, sequence:TCCCTCCCCATCTTTTCC. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:20196 same embryo
	EMAGE:20194 same embryo
	EMAGE:20193 same embryo
	EMAGE:20192 same embryo
	EMAGE:20191 same embryo
	EurExpress:euxassay_012462 same experiment
	MGI:4828595 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source