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EMAGE:6417

Cecr2 cat eye syndrome chromosome region, candidate 2 homolog (human) ( MGI:1923799)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:6417 EMAGE:6417 EMAGE:6417 EMAGE:6417 EMAGE:6417
"Pseudo-wholemount" of euxassay_016232. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_016232_01 euxassay_016232_02 euxassay_016232_03 euxassay_016232_04
EMAGE:6417 EMAGE:6417 EMAGE:6417 EMAGE:6417 EMAGE:6417
euxassay_016232_05 euxassay_016232_06 euxassay_016232_07 euxassay_016232_08 euxassay_016232_09
EMAGE:6417 EMAGE:6417 EMAGE:6417 EMAGE:6417 EMAGE:6417
euxassay_016232_10 euxassay_016232_11 euxassay_016232_12 euxassay_016232_13 euxassay_016232_14
EMAGE:6417 EMAGE:6417 EMAGE:6417 EMAGE:6417 EMAGE:6417
euxassay_016232_15 euxassay_016232_16 euxassay_016232_17 euxassay_016232_18 euxassay_016232_19
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euxassay_016232_20 euxassay_016232_21 euxassay_016232_22 euxassay_016232_23 euxassay_016232_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:6417Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
6417_wholemount_strong.wlz
6417_wholemount_moderate.wlz
6417_wholemount_weak.wlz
6417_wholemount_possible.wlz
6417_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:6417_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
nasal cavity olfactory epithelium
weak weak
regionalweak expression: see section 09 10 12 13 14 15
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T45417
Entity Detected:Cecr2, cat eye syndrome chromosome region, candidate 2 homolog (human) ( MGI:1923799)
Sequence:sense strand is shown

>T45417
ACATGTCCCATCCTTACAGCTTGGGCAGATGAATTGTCCCAGTCAAGATGGAAACATGTATCCACCAGCT
CCATTCCAGGCAGGATTTATTCCTTCTAGGCATGGTGGGACTCCAGCCCGACCCCCAGACTTTCCTGAAA
GCTCTGAAATTCCTCCCGGTCATATTTATCATTCATACAAGTATCTAAATCGAGCACACCCTGCTGTTTG
GAATGGGAACCATGGTACTACAAACCCTGGACGTTTGGGGCCAGATGAGAAGCCCCACCTGGGGCCAGGA
CCCTCTCACCACCCTCATACCCTTGGTCATATGATGGATGGCCGAGTGATGAGACAACCTATCCCACCAA
ACCAGTGGACTAAACAGTCAAGCTTTCTACCTCATGGAGTTCCTTCCTCGGGGTATATGCAG
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from genomic DNA prepared from tail-tips of two wild-type C57BL/6J mice), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 202317. Forward Primer - name:202317_F_exon_Cecr2, sequence:ACATGTCCCATCCTTACAGCTT; Reverse Primer - name:202317_N_SP6_exon_Cecr2, sequence:CTGCATATACCCCGAGGAAGG. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:6420 same embryo
 EMAGE:6419 same embryo
 EMAGE:6415 same embryo
 EMAGE:6418 same embryo
 EMAGE:6416 same embryo
 EurExpress:euxassay_016232 same experiment
 MGI:4823799 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS