EMAGE mouse gene expression spatial database

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EMAGE:8432

Nrp2 neuropilin 2 ( MGI:1100492)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_009620. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_009620_01	euxassay_009620_02	euxassay_009620_03	euxassay_009620_04

euxassay_009620_05	euxassay_009620_06	euxassay_009620_07	euxassay_009620_08	euxassay_009620_09

euxassay_009620_10	euxassay_009620_11	euxassay_009620_12	euxassay_009620_13	euxassay_009620_14

euxassay_009620_15	euxassay_009620_16	euxassay_009620_17	euxassay_009620_18	euxassay_009620_19

euxassay_009620_20	euxassay_009620_21	euxassay_009620_22	euxassay_009620_23

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

8432_wholemount_strong.wlz

8432_wholemount_moderate.wlz

8432_wholemount_weak.wlz

8432_wholemount_possible.wlz

8432_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:8432_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

medulla oblongata basal plate mantle layer

moderate

regional

moderate expression: see section 07 08 09 15 16

glossopharyngeal ix ganglion

moderate

single cell

moderate expression: see section 06 07 17 18

trigeminal v ganglion

moderate

single cell

moderate expression: see section 02 03 04 05 06 07 08 17 18 19 20 21 22

dorsal root ganglion

moderate

regional

moderate expression: see section 06 07 08 09 10 12 15 16 17 weak expression: see section 13 14

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T36702
Entity Detected:	Nrp2, neuropilin 2 ( MGI:1100492)
Sequence:	sense strand is shown >T36702 ATTGTGAGTGCAGATCCATGACTGGGGCTAGTGCAGCAATGAAACAGAATTCCAGAAACAGTGTGTTCTT TTTATTATGGGAAAATACAGATAAAAATGGCCACTGATGAACATGAAAGTTAGCACTTTCCCAACACAGT GTACACTTGCAACCTTGTTTTGGATTTCTCATACACCAAGACTGTGAAACACAAATTTCAAGAATGTGTT CAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGCTTGTG TGTTTCTGTCAGTGGTATGAGTGATATGTATGCATGTGTGTATGTATATGTATGTATGTATGTATGTATG TACGTACATATGTATGTATGTATGTATGTATGTATGTATGTATATGTGTGTGTGTGTTTGTGTGTGTGTG TGTTTGTGTGTGTGTGTGTGGTAAGTGTGGTATGTGTGTATGCATTTGTCTATATGTGTATCTGTGTGTC TATGTGTTTCTGTCAGTGGAATGAGTGGCATGTGTGCATGTGTATGTATGTGGA
Notes:	The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 101414. Forward Primer - name:101414_F_cDNA_Nrp2, sequence:ATTGTGAGTGCAGATCCATGAC; Reverse Primer - name:101414_N_SP6_cDNA_Nrp2, sequence:TCCACATACATACACATGCACAC. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:8430 same embryo
	EMAGE:8431 same embryo
	EMAGE:8428 same embryo
	EMAGE:8433 same embryo
	EMAGE:8429 same embryo
	EurExpress:euxassay_009620 same experiment
	MGI:4826798 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source