EMAGE mouse gene expression spatial database

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EMAGE:10099

Ttc39a tetratricopeptide repeat domain 39A ( MGI:2444350)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_000106. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_000106_01	euxassay_000106_02	euxassay_000106_03	euxassay_000106_04

euxassay_000106_05	euxassay_000106_06	euxassay_000106_07	euxassay_000106_08	euxassay_000106_09

euxassay_000106_10	euxassay_000106_11	euxassay_000106_12	euxassay_000106_13	euxassay_000106_14

euxassay_000106_15	euxassay_000106_16	euxassay_000106_17	euxassay_000106_18	euxassay_000106_19

euxassay_000106_20	euxassay_000106_21	euxassay_000106_22	euxassay_000106_23	euxassay_000106_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

10099_wholemount_strong.wlz

10099_wholemount_moderate.wlz

10099_wholemount_weak.wlz

10099_wholemount_possible.wlz

10099_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:10099_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

gut

weak

homogeneous

weak expression: see section 17

pancreas

strong

regional

strong expression: see section 10 11 12 17 18 moderate expression: see section 13 14 15 16

rectum

moderate

regional

moderate expression: see section 16 weak expression: see section 14 15

liver

weak

homogeneous

weak expression: see section 02 03 05 06 09 10 11 13 14 15 16 18 19 20 21 22 23 24 not detected expression: see section 04

bladder

weak

regional

weak expression: see section 15

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T1551
Entity Detected:	Ttc39a, tetratricopeptide repeat domain 39A ( MGI:2444350)
Sequence:	sense strand is shown >T1551 TATCACACCTTCCTCACCTTCGTGCTCGGTACTGGGAATGTCAACATCGAGGAGGCAGAGAAGCTGCTGA AGCCCTACCTGAACCGATACCCCAAGGGCGCCATCTTCCTGTTCTTTGCTGGGCGGATTGAAGCTATCAA AGGAAATATTGATGCTGCTGTCCGGCGGTTTGAGGAGTGCTGCGAGGCCCAGCAGCACTGGAAGCAGTTT CACCACATGTGCTACTGGGAGCTGATGTGGTGCTTTACCTACAAGGGCCAGTGGAAAATGGCCTACTTCT ACGCCGACCTGCTGAGCAAGGAGAACTCCTGGTCCAAGGCCACCTACATCTACATGAAGGCTGCCTACCT CAGCATGTTTGGGAAGGAAGACTACAAGCCATTCGGGGACAATGAAGTGGAGTTATTCAGGGCCGTGCCA GGCTTGAAGCTCAAGATTGCTGGGAAATCTCTACCCACAGAGAAGTTTGCTATCCGGAAGTCCAGGCGCT ACCTCTCCCCCAACCCCATCTCCTTGC
Notes:	The probe template was PCR amplified from IMAGE:865705 using vector specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:865705 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:10100 same embryo
	EMAGE:10102 same embryo
	EMAGE:10103 same embryo
	EMAGE:10101 same embryo
	EurExpress:euxassay_000106 same experiment
	MGI:4828987 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source